Sequence
atgc intronic sequence ATGC exonic sequence...aacaattaaataaataaaagacaagtggcctagctgcattcagtctggattaccacttttattgtgcttactctcttttttttttttgtctttctccaagGTCTTCTTTGCAATGGAAGGTAATCAATCAGTTGCTACCCTCATAGACTCAACAACCTGTAAGATTCAACAGCTTCAGAAAGCATTTGCTGAACTTGAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0151g00650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G23760.1 (Glycine max), 3'ss of exon 2
aacaattaaataaataaaagacaagtgg--ccta--gctgcattcagtctggattaccacttttattgtgcttactctcttttttttttttgtctttctccaagGTCTTCTTTGCAATGGAAGGTAATCAATCAGTTGCTACCCTCATAGACTCAACAACCTGTAAGATTCAACAGCTTCAGAAAGCATTTGCTGAACTTGAAA--
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---attgtaattgctgatatatgtttagttcctactactgcacatggtttgtctgtatataatt-taaaacttggtatttgtttcattattttatcttcttcag-
upper sequence: Vv07s0151g00650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G23740.1 (Glycine max), 3'ss of exon 1
aacaattaaataa-ataaaagacaagtg-gcctagctgc-attcagtctggattaccacttttattgtgcttactctcttttttttttttgtctttctccaagGTCTTCTTTGCAATGGAAGGTAATCAATCAGTTGCTACCCTCATAGACTCAACAACCTGTAAGATTCAACAGCTTCAGAAAGCATTTGCTGAACTTGAAA--
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---aatcggataatgcactagattgttaagtttagctattagatatattacataagttgaagttttgtgattggtatttagtttattgttttattttgttcag-
upper sequence: Vv07s0151g00650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G48385.1 (Arabidopsis thaliana), 3'ss of exon 2
aacaattaaataaataaaagacaagtggcctagctgcattcagtctggattaccacttttattgtgcttactc-tcttttttttttttgtctttctccaagGTCTTCTTTGCAATGGAAGGTAATCAATCAGTTGCTACCCTCATAGACTCAACAACCTGTAAGATTCAACAGCTTCAGAAAGCATTTGCTGAACTTGAAA-
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-gtaacaatattg-tgtctggcctctaatgtcgttgtactcatgtttgttt-ttatttgttcgggactttttaatcattacttaaatttccgttttatttagGCTCTTTTGTGATGGAGGATACTCGGTCAGTTGCTTCACTCATGGACTCTACATCATCCAAGATTCAGCAGCTTCAGAAGGCGTTTGCTGAACTTGAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggattaccacttttattgtgcttactctcttttttttttttgtctttctccaagGTCTTCTTTGCAATGGAAGGTAATCAATCAGTTGCTACCCTCATAGACTCAACAACCTGTAAGATTCAACAGCTTCAGAAAGCATTTGCTGAACTTGAAA
tgcttac putative branch site (score: 2)
cttttattgtgcttac CT-rich tract
ttttttttttttgtct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aacaattaaataaataaaagacaagtggcctagctgcattcagtctggattaccacttttattgtgcttactctcttttttttttttgtctttctccaagGTCTTCTTTGCAATGGAAGGTAATCAATCAGTTGCTACCCTCATAGACTCAACAACCTGTAAGATTCAACAGCTTCAGAAAGCATTTGCTGAACTTGAAA
- -aattaaa
- - - -aaataaa
- - - - - - - - - - - - - - - - - -gcattca