1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttagattaatgtggtgatgttgctgacattgattcatgttttatattttatccactttattatgaacttggtcaataaaatttcactctactcttttcagCGATGTTTATGAAGGAACCCGGATGGCTAGGGTGACAGATCTCCCTGGAATAAAACAAATAATCCAACCTTTAGAAGAATCAGGCACATTGATCCGGAGG
species | Vitis vinifera |
transcript | Vv07s0151g00160.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ttttatccactttattatgaacttggtcaataaaatttcactctactcttttcagCGATGTTTATGAAGGAACCCGGATGGCTAGGGTGACAGATCTCCCTGGAATAAAACAAATAATCCAACCTTTAGAAGAATCAGGCACATTGATCCGGAGG
tttcactctactcttt CT-rich tract
tttattatgaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagattaatgtggtgatgttgctgacattgattcatgttttatattttatccactttattatgaacttggtcaataaaatttcactctactcttttcagCGATGTTTATGAAGGAACCCGGATGGCTAGGGTGACAGATCTCCCTGGAATAAAACAAATAATCCAACCTTTAGAAGAATCAGGCACATTGATCCGGAGG
- - - - -tgtggtg
- - - - - - - - - - - ctgacat
- - - - - - - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - tatccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa