1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttttcctgttaaaaacagttgttctcataataaagtcattaactaaaaccatacataaaaataaagcaggtgaataattcatggaaattggaattttagGGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTTGGCCGGGCAGAAGGGCGGCAGCGAGGAAGGGGAGAAGGTGAGCTGCAAC
species | Vitis vinifera |
transcript | Vv07s0141g00290.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAA GGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTTEST: gi|110368237|gb|EC932208.1|EC932208
genomic: AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAAgtgagtttct ... ggaattttagGGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTT
EST: AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAA GGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTTEST: gi|110690829|gb|EE068235.1|EE068235
genomic: AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAAgtgagtttct ... ggaattttagGGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTT
EST: AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAA GGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTTEST: gi|110690342|gb|EE067357.1|EE067357
genomic: AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAAgtgagtttct ... ggaattttagGGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTT
EST: AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAA GGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTTEST: gi|110374116|gb|EC938663.1|EC938663
genomic: AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAAgtgagtttct ... ggaattttagGGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTT
EST: AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAA GGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTT
genomic: AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAAgtgagtttct ... ggaattttagGGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTT
aaaaccatacataaaaataaagcaggtgaataattcatggaaattggaattttagGGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTTGGCCGGGCAGAAGGGCGGCAGCGAGGAAGGGGAGAAGGTGAGCTGCAAC
aactaaa putative branch site (score: 2)
atacataaaaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttcctgttaaaaacagttgttctcataataaagtcattaactaaaaccatacataaaaataaagcaggtgaataattcatggaaattggaattttagGGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTTGGCCGGGCAGAAGGGCGGCAGCGAGGAAGGGGAGAAGGTGAGCTGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- -ttcctgt
- - - - - -aaaaaca
- - - - - - - - - - - - - - -aataaag
- - - - - - - - - - - - - - - - - - - - -aactaaa
- - - - - - - - - - - - - - - - - - - - - - - - -ccataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatgg