1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgttgtcattacttcttaaaagcatttccatttactgttcaaacatttctccttttccttgtactgttccattgggaatgaaattaccatcctgttgtagGCTTTCCATGGTCAACCAATGCAGGCTACCGTTGCTGCAGCACCACATCCTCCTGCAATTCGCCCAAGGGTGCGGGCGAGACGTGGACAGGCCACAGATC
species | Vitis vinifera |
transcript | Vv07s0141g00220.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATGGTAGAGCTTCTACCGTGAAAAAT GCTTTCCATGGTCAACCAATGCAGGCTACCGTTGCTGCAGCACCACATCCTEST: gi|294965144|gb|GW836975.1|GW836975
genomic: GATGGTAGAGCTTCTACCGTGAAAAATgtaagttttt ... cctgttgtagGCTTTCCATGGTCAACCAATGCAGGCTACCGTTGCTGCAGCACCACATCCT
EST: AGCGCTTTCGTGAGGAGGTTATTGATGGTAGAGCTTCTACCGTGAAAAAT GCTTTCCATGGTCAACCAATGCAGGCTACCGTTGCTGCAGCACCACATCCTEST: gi|161705491|gb|FC057519.1|FC057519
genomic: AGCGCTTTCGTGAGGAGGTTATTGATGGTAGAGCTTCTACCGTGAAAAATgtaagttttt ... cctgttgtagGCTTTCCATGGTCAACCAATGCAGGCTACCGTTGCTGCAGCACCACATCCT
EST: AGCGCTTTCGTGAGGAGGTTATTGATGGTAGAGCTTCTACCGTGAAAAAT GCTTTCCATGGTCAACCAATGEST: gi|34549352|gb|CF517584.1|CF517584
genomic: AGCGCTTTCGTGAGGAGGTTATTGATGGTAGAGCTTCTACCGTGAAAAATgtaagttttt ... cctgttgtagGCTTTCCATGGTCAACCAATG
EST: AGCGCTTTCGTGAGGAGGTTATTGATGGTAGAGCTTCTACCGTGAAAAAT GCTTTCCATGGTCAACCAATGCAGGCTACCGTTGCTGCAGCACCACATCCTEST: gi|161710906|gb|FC058187.1|FC058187
genomic: AGCGCTTTCGTGAGGAGGTTATTGATGGTAGAGCTTCTACCGTGAAAAATgtaagttttt ... cctgttgtagGCTTTCCATGGTCAACCAATGCAGGCTACCGTTGCTGCAGCACCACATCCT
EST: AGCGCTTTCGTGAGGAGGTTATTGATGGTAGAGCTTCTACCGTGAAAAAT GCTTTCCATGGTCAACCAATGCAGGCTACCGTTGCTG
genomic: AGCGCTTTCGTGAGGAGGTTATTGATGGTAGAGCTTCTACCGTGAAAAATgtaagttttt ... cctgttgtagGCTTTCCATGGTCAACCAATGCAGGCTACCGTTGCTG
tttctccttttccttgtactgttccattgggaatgaaattaccatcctgttgtagGCTTTCCATGGTCAACCAATGCAGGCTACCGTTGCTGCAGCACCACATCCTCCTGCAATTCGCCCAAGGGTGCGGGCGAGACGTGGACAGGCCACAGATC
ccatcct CT-rich tract
aatgaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgtcattacttcttaaaagcatttccatttactgttcaaacatttctccttttccttgtactgttccattgggaatgaaattaccatcctgttgtagGCTTTCCATGGTCAACCAATGCAGGCTACCGTTGCTGCAGCACCACATCCTCCTGCAATTCGCCCAAGGGTGCGGGCGAGACGTGGACAGGCCACAGATC
tgttgtc
- - - - - - - - -aaaagca
- - - - - - - - - - - - - - catttac
- - - - - - - - - - - - - - - - - - - tcaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaa