1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttctggatccagaatatcttatgtttcatggaattcctttcaatatctctattccctgtttggattttctgaccaattgatccctctcatattacacagAGATTTTATGGTTTTGCCATATGCTTGGCTGCTGGTTTAACTTGTACACTCTTG
species | Vitis vinifera |
transcript | Vv07s0130g00230.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCTTTCATGGATGACTTCAATCGCGACTGCACTTTGTCCACCAAACAG AGATTTTATGGTTTTGCCATATGCTTGGCTGCTGGTTTAACTTGTACACTCEST: gi|110399003|gb|EC965487.1|EC965487
genomic: TCTCTTTCATGGATGACTTCAATCGCGACTGCACTTTGTCCACCAAACAGgtccgtttgg ... tattacacagAGATTTTATGGTTTTGCCATATGCTTGGCTGCTGGTTTAACTTGTACACTC
EST: TCTCTTTCATGGATGACTTCAATCGCGACTGCACTTTGTCCACCAAACAG AGATTTTATGGTTTTGCCATATGCTTGGCTGCTGGTTTAACTTGTACACTCEST: gi|33402532|gb|CF208159.1|CF208159
genomic: TCTCTTTCATGGATGACTTCAATCGCGACTGCACTTTGTCCACCAAACAGgtccgtttgg ... tattacacagAGATTTTATGGTTTTGCCATATGCTTGGCTGCTGGTTTAACTTGTACACTC
EST: TCTCTTTCATGGATGACTTCAATCGCGACTGCACTTTGTCCACCAAACAG AGATTTTATGGTTTTGCCATATGCTTGGCTGCTGGTTTAACTTGTACACTCEST: gi|33402509|gb|CF208136.1|CF208136
genomic: TCTCTTTCATGGATGACTTCAATCGCGACTGCACTTTGTCCACCAAACAGgtccgtttgg ... tattacacagAGATTTTATGGTTTTGCCATATGCTTGGCTGCTGGTTTAACTTGTACACTC
EST: TCTCTTTCATGGATGACTTCAATCGCGACTGCACTTTGTCCACCAAACAG AGATTTTATGGTTTTGCCATATGCTTGGCTGCTGGTTTAACTTGTACACTC
genomic: TCTCTTTCATGGATGACTTCAATCGCGACTGCACTTTGTCCACCAAACAGgtccgtttgg ... tattacacagAGATTTTATGGTTTTGCCATATGCTTGGCTGCTGGTTTAACTTGTACACTC
atctctattccctgtttggattttctgaccaattgatccctctcatattacacagAGATTTTATGGTTTTGCCATATGCTTGGCTGCTGGTTTAACTTGTACACTCTTG
tccctctcat CT-rich tract
tcatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctggatccagaatatcttatgtttcatggaattcctttcaatatctctattccctgtttggattttctgaccaattgatccctctcatattacacagAGATTTTATGGTTTTGCCATATGCTTGGCTGCTGGTTTAACTTGTACACTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - -ggatcca
- - - - - - - - - - - - -ttcatgg
- - - - - - - - - - - - - - - - - - cctttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctc