1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cttaactgtttttaaatacttatactctattgtgccaaatgtacttatttccaattctaacagtcaatatctgatccatttacatgcttttatttgtaagGTCCAAAAGGCTGAATTTCGAAAGAAGGAGTGGAGATACTTTGTTCATTACCTT
species | Vitis vinifera |
transcript | Vv07s0129g01020.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGGTGAGAAGGTCCTCGCTTATCACGGGCCCCGCATCTACGAAGCGAAG GTCCAAAAGGCTGAATTTCGAAAGAAGGAGTGGAGATACTTTGTTCATTACEST: gi|71857480|gb|DT006535.1|DT006535
genomic: AAGGTGAGAAGGTCCTCGCTTATCACGGGCCCCGCATCTACGAAGCGAAGgtatctttct ... tatttgtaagGTCCAAAAGGCTGAATTTCGAAAGAAGGAGTGGAGATACTTTGTTCATTAC
EST: AAGGTGAGAAGGTCCTCGCTTATCACGGGCCCCGCATCTACGAAGCGAAG GTCCAAAAGGCTGAATTTCGAAAGAAGGAGTGGAGATACTTTGTTCATTAC
genomic: AAGGTGAGAAGGTCCTCGCTTATCACGGGCCCCGCATCTACGAAGCGAAGgtatctttct ... tatttgtaagGTCCAAAAGGCTGAATTTCGAAAGAAGGAGTGGAGATACTTTGTTCATTAC
tatttccaattctaacagtcaatatctgatccatttacatgcttttatttgtaagGTCCAAAAGGCTGAATTTCGAAAGAAGGAGTGGAGATACTTTGTTCATTACCTT
cttttattt CT-rich tract
ttttatttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaactgtttttaaatacttatactctattgtgccaaatgtacttatttccaattctaacagtcaatatctgatccatttacatgcttttatttgtaagGTCCAAAAGGCTGAATTTCGAAAGAAGGAGTGGAGATACTTTGTTCATTACCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - ccaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgct