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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacccggtgttcctcccctcttttttttctcgattgcattcattttatttctgttcttgtgttgaattgaggtgcttcttttagGTATTACACTACGAGGATTTGGATCGGAACACCGCCTCAGACATTTGCGCTCATTGTTGATACGGGGAGTACTCTTACGTATGTTCCATGCTCTACGTGC

Basic information

species Vitis vinifera
transcript Vv07s0129g00600.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G17990.1 (Glycine max), 3'ss of exon 1
----------------------gtacccggtgttcctcccctcttttttttctcgattgcattcatttt---atttctgttcttgtgttgaattgaggtgcttcttttagGTATTACACTACGAGGATTTGGATCGGAACACCGCCTCAGACATTTGCGCTCATTGTTGATACGGGGAGTACTCTTACGTATGTTCCATGCTCTACGTGC
                       | | || | ||||| |  |  || ||  |    |   ||  | ||    | |||     |||||| |||||||  || || ||||||||||||||| ||| || |||||||||| || || || ||||  |||||||||||||||||||||||||| ||| ||||||||||||| ||||| || |||
gtaaaaacctcttacgtcgtcgtttcacgctcttccttcatttcttcttcgccttttcaaatcaaattcggaaattcaagatttgtgt-gaattgaa-tggtttttttagGTATTACACGACGCGGCTTTGGATCGGGACTCCTCCGCAGATGTTTGCGCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACATGC

upper sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G21800.1 (Glycine max), 3'ss of exon 1
---------------------------------------gtacccggtgttcctcccctcttttttttctcgattgcattcattttatttctgttcttgtgttgaattgaggtgcttcttttagGTATTACACTACGAGGATTTGGATCGGAACACCGCCTCAGACATTTGCGCTCATTGTTGATACGGGGAGTACTCTTACGTATGTTCCATGCTCTACGTGC
                                        | |    | ||| ||  ||  ||   ||||  | |  |       || |||     |||||| |||||||  || || ||||||||||||||| ||| || |||||||||| || || || ||||  ||||| |||||||||||||||||||| ||| ||||||||||||| ||||| || |||
gtaaaaacctattacgtcgtcgtttaacgcgctttctttcttcttcttcttcttcttcttcttcgcttcttaaatcaaaattcggtaattcgagatttgtgt-gaattgaa-tggtttttttagGTATTACACGACGCGGCTTTGGATCGGTACTCCTCCGCAGATGTTTGCTCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACTTGC

upper sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G05490.1 (Glycine max), 3'ss of exon 1
-----------------------gtacccggtgttcctcccc---tcttttttttctcgattgcatt---cattttatttctgttc-ttgtgttgaattgaggtgcttcttt----tagGTATTACACTACGAGGATTTGGATCGGAACACCGCCTCAGACATTTGCGCTCATTGTTGATACGGGGAGTACTCTTACGTATGTTCCATGCTCTACGTGC
                        | | |   || ||| ||    | |||| ||| || | |  |||   || ||| ||  ||||  || |||    ||  ||   ||   |    ||||||||| || |||||| |||||||||| || || || ||||  ||||| || ||||||||||||||||| ||| | || |||||||| |||||||| |||
gttagtctctttcactccctcgcttcctctacgtcccttcctcttttttttctttttcaaattaatttttcacttttttgttgttaattatgtgtgttttgggaaattggatggagtagGTATTATACGACGAGGCTTTGGATCGGTACTCCTCCGCAGAGGTTTGCTCTTATTGTTGATACGGGGAGCACTGTCACCTATGTTCCGTGCTCTACTTGC

upper sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G39800.1 (Glycine max), 3'ss of exon 4
-------------gtacccggtgttcctcccctcttttttttctcgattgcattcattttattt-ctgttctt--------gtgttgaattgaggtgcttcttt----tagGTATTACACTACGAGGATTTGGATCGGAACACCGCCTCAGACATTTGCGCTCATTGTTGATACGGGGAGTACTCTTACGTATGTTCCATGCTCTACGTGC
                |||    ||||||   | ||||||| |   || |  |||  ||| |||  |||| ||        ||||    ||  ||   ||   |    ||| || || ||  || || |||||||||| || || || ||||  ||||| || ||||||||||||||||||||| |||| |||||||| |||||||| || 
gttagtctctttcactccctcgcttcctcttttttttttttccaaaatagttttcgctttttttgttgttgttaattatgtgtgtgtgttttgggaaattggatggagtagCTACTATACGGCGCGGCTTTGGATCGGCACTCCTCCGCAGAGGTTTGCTCTTATTGTTGATACGGGGAGTACTGTTACCTATGTTCCGTGCTCTACTTGT

upper sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G50050.1 (Arabidopsis thaliana), 3'ss of exon 1
gtacccggtgttcctcccctcttttttttctcgattgcattcattttatttctgttcttgtgttgaat-tgaggtgcttcttttagGTATTACACTACGAGGATTTGGATCGGAACACCGCCTCAGACATTTGCGCTCATTGTTGATACGGGGAGTACTCTTACGTATGTTCCATGCTCTACGTGC
       ||  || |||  |    | |||| ||||     |||| | |       |||| | |  | | | |  |  |  || ||||||||||||||||||| ||||||| || ||||| || || |  ||||| || || |||||| | || |||||| |||| |||||||| || |||   || 
-------gtaatc-tccttttccatatttcccgatctgggtcatgtaaagatgtctcttttatatactattatatcgtatttgtagGTATTACACTACGAGGCTTTGGATTGGTACACCACCACAAATGTTTGCTCTTATAGTTGATTCTGGTAGTACTGTTACTTATGTTCCTTGTTCTGATTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgattgcattcattttatttctgttcttgtgttgaattgaggtgcttcttttagGTATTACACTACGAGGATTTGGATCGGAACACCGCCTCAGACATTTGCGCTCATTGTTGATACGGGGAGTACTCTTACGTATGTTCCATGCTCTACGTGC
                                           tgcttctttt  CT-rich tract
        attcattttatttct  TA-rich tract