Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgataatagtttgttctctttgtttagggaattgtaattttcaaaatctgtatgttgaactaatttttctctcattctcttcccttctttttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAGCGAGGTTTTTGAAGGCATAAATGTTAATAGCAACGAGCGATGCATAATC

Basic information

species Vitis vinifera
transcript Vv07s0129g00410.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0129g00410.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G22250.1 (Glycine max), 3'ss of exon 1
ttgataatagtttgt-tctctttgtttagggaattgtaatt-ttcaaaatctgtatgttgaactaatttttctctcattctcttcccttctttttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAGCGAGGTTTTTGAAGGCATAAATGTTAATAGCAACGAGCGATGCATAATC
 | ||||   ||  | | |||  |    |    |||| |   || | ||| | |   |  || ||  || | | | |   |  |   | || ||| ||  |||||||| ||||| ||||||||||| || ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| || ||||||
cttataaacattgatgtgtctcaggactgattcttgtgaggatttagaatttttcattccaattatgttatttatgaaatttctgtgtgctctttttc--agTGATCAAGATGATTATGAGGTTGTGCGCAAAGTGGGAAGGGGAAAGTACAGTGAGGTTTTTGAAGGCATAAATGTTAATAGCAATGAGCGTTGTATAATC

upper sequence: Vv07s0129g00410.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G17790.1 (Glycine max), 3'ss of exon 1
-ttgataatagtttgt-tctctttgtttagggaattgtaattttcaaaatctgtatgttgaactaatttttctctcattctcttcccttctttttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAGCGAGGTTTTTGAAGGCATAAATGTTAATAGCAACGAGCGATGCATAATC
  | ||||   ||  | | | || |    |    |||| |   |  | || | |   |  || ||  || | | | | |        | || ||| ||  |||||||| ||||| ||||||||||| || ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||  |||||
acttataaacattgatgtgtattaggactgattcttgtgaggatttagatttttccttccaattatgttatttatgaattctccgtgtgctctttttc--agTGATCAAGATGATTATGAGGTTGTGCGCAAAGTGGGAAGGGGAAAGTACAGTGAGGTTTTTGAAGGCATAAATGTTAATAGCAATGAGCGTTGTGTAATC

upper sequence: Vv07s0129g00410.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G05340.2 (Glycine max), 3'ss of exon 1
ttgataatagtttgttctctttgtttagggaattgtaattttcaaaatctgtatgttgaactaatttttctctcattctcttccct--tctttttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAGCGAGGTTTTTGAAGGCATAAATGTTAATAGCAACGAGCGATGCATAATC
 |  |      ||  |   |    || |     || |||  |||| ||     | ||  ||   ||| | |   |||  |||  |   | ||||| | |||||||||| ||||| ||||||||||| || ||||| || ||||| ||||| || || |||||||||||||||||||| |||||||| ||||| || ||||||
cttgtgccgagttaattgatcgaatttgttctctg-aatcctcaatata-acctcttatacccttttctttaaaatttacttagcgagtattttttttccagTGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAATATAGTGAAGTTTTTGAAGGCATAAATGTCAATAGCAATGAGCGCTGTATAATC

upper sequence: Vv07s0129g00410.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G39950.1 (Glycine max), 3'ss of exon 1
ttgataatagtttgttctctttgtttagggaattgtaattttcaaaatctgtatgttgaactaatttttctctcatt---ctcttcccttctttt-tctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAGCGAGGTTTTTGAAGGCATAAATGTTAATAGCAACGAGCGATGCATAATC
 |||   |  ||  |    ||||||    ||||  | | | |  || | |||||          |||||   | | |   |   |     ||||| | |  ||||||||| ||||| ||||||||||| || ||||| || ||||| ||||| || || |||||||||||||||||||| |||||||| ||||| || ||||| 
-tga-gttcattgatcgaatttgttctctgaatcctcaatat--aactttgtataccatttctttttttaatttactgagcgagtgttgccttttatttttcagTGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGTAAATATAGTGAAGTTTTTGAAGGCATAAATGTCAATAGCAATGAGCGCTGTATAATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352781782|gb|FQ469080.1|FQ469080
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|352774031|gb|FQ474554.1|FQ474554
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|161721205|gb|FC070711.1|FC070711
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|30304833|gb|CB981627.1|CB981627
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|352764201|gb|FQ471181.1|FQ471181
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACGG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|110701695|gb|EE079563.1|EE079563
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|352778214|gb|FQ465524.1|FQ465524
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|46917820|gb|CN547149.1|CN547149
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|33406981|gb|CF212608.1|CF212608
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAGGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|161711507|gb|FC058709.1|FC058709
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|352773413|gb|FQ472195.1|FQ472195
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|30125844|gb|CB911183.1|CB911183
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|110729975|gb|EE106523.1|EE106523
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|352767903|gb|FQ466112.1|FQ466112
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|110709123|gb|EE084310.1|EE084310
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|71855509|gb|DT004564.1|DT004564
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|352764511|gb|FQ472868.1|FQ472868
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|110701754|gb|EE079686.1|EE079686
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|352773833|gb|FQ472965.1|FQ472965
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|71855301|gb|DT004356.1|DT004356
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|352763673|gb|FQ473376.1|FQ473376
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|352768610|gb|FQ467822.1|FQ467822
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|30133506|gb|CB918845.1|CB918845
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|71858798|gb|DT007853.1|DT007853
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|30298159|gb|CB974953.1|CB974953
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|161714046|gb|FC064121.1|FC064121
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|161712496|gb|FC061801.1|FC061801
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|110708398|gb|EE085895.1|EE085895
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|161718377|gb|FC065018.1|FC065018
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|30127709|gb|CB913048.1|CB913048
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|33406820|gb|CF212447.1|CF212447
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|161707813|gb|FC056453.1|FC056453
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|71865018|gb|DT014073.1|DT014073
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|32269469|gb|CD718628.1|CD718628
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|71856733|gb|DT005788.1|DT005788
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATCAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|352772933|gb|FQ470548.1|FQ470548
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|110410083|gb|EC975759.1|EC975759
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|110722026|gb|EE097906.1|EE097906
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|352768977|gb|FQ468168.1|FQ468168
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|161714561|gb|FC063551.1|FC063551
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|352782426|gb|FQ470329.1|FQ470329
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|32269397|gb|CD718556.1|CD718556
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
EST: gi|32269900|gb|CD719059.1|CD719059
EST:     CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGG                         TGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG
genomic: CTTCGCCCCAAAGATTACTGGGATTACGAATCTCTCACCGTTCAGTGGGGgtacatatcg ... tttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatctgtatgttgaactaatttttctctcattctcttcccttctttttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAGCGAGGTTTTTGAAGGCATAAATGTTAATAGCAACGAGCGATGCATAATC
             aactaat  putative branch site (score: 2)
               ctaatttttctctcat  CT-rich tract
          ttgaactaattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgataatagtttgttctctttgtttagggaattgtaattttcaaaatctgtatgttgaactaatttttctctcattctcttcccttctttttctcccagTGATCAGGATGACTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAGCGAGGTTTTTGAAGGCATAAATGTTAATAGCAACGAGCGATGCATAATC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - caaaatc
- - - - - - - - - - - - - - - - - - - - - - - - -tgtatgt