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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttgatttgttttgcatttgaatttcatttcatttcatttggctttgtgttgtgaggtgatattttttctagggtttgtgagaatgcggagctttgattggggttttctttgattttgttctgaaatatagAGTCGATGTGGCGGTTGGGGTTGAGCAGCAGGGAATCCTACCCAGAGCGGCCTGGTGTGGCTGACTGTGTCTACTATATGAAAACCGGGTTTTGCGGGTT

Basic information

species Vitis vinifera
transcript Vv07s0104g01460.t01
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgagaatgcggagctttgattggggttttctttgattttgttctgaaatatagAGTCGATGTGGCGGTTGGGGTTGAGCAGCAGGGAATCCTACCCAGAGCGGCCTGGTGTGGCTGACTGTGTCTACTATATGAAAACCGGGTTTTGCGGGTT
                               ctttgat  putative branch site (score: 5)
                                     ttttgttct  CT-rich tract
                           ttttctttgatttt  TA-rich tract