Sequence
atgc intronic sequence ATGC exonic sequence...tagattctactgaattccactttattcctatctctcctttggattcaattttctgaattttggttgagataccaacttttgtgtttatgtaattttgtagTGCAAGTGTGTTTGGCGTCTCTGCGGAATCAATGCAATGTTCTTATGATTCAAAAGGAAATAGCGTCCCCACTATTCTCTTGCTAATGCAGGAGAGGTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0104g01120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G36630.1 (Glycine max), 3'ss of exon 1
tagattcta---ctgaattccactttattcctatctctcctttggattcaattttctgaattttggttgagataccaacttttgtgtttatgtaattttgtagTGCAAGTGTGTTTGGCGTCTCTGCGGAATCAATGCAATGTTCTTATGATTCAAAAGGAAATAGCGTCCCCACTATTCTCTTGCTAATGCAGGAGAGGTTA
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tgggtttggggttcatgtattttttctttcctaaacctcatctag---caagattatatatcttcatccatatgctaatctgattttctatcatcaattgcagTGTTAGTGTGTTTGGCGTCTCAGCAGAATCAATGCAGTGTTCCTATGATTCAAAAGGAAACAGCGTCCCCACTATTCTACTGCTAATGCAAGATCGATTA
upper sequence: Vv07s0104g01120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G02720.1 (Glycine max), 3'ss of exon 1
tagattctactg--aattccactttattcctatctctcctttggatt-caattttctgaattttggttgagataccaacttttgtgtttatgtaattttgtagTGCAAGTGTGTTTGGCGTCTCTGCGGAATCAATGCAATGTTCTTATGATTCAAAAGGAAATAGCGTCCCCACTATTCTCTTGCTAATGCAGGAGAGGTTA
||||| || | || || | ||| | | | | || | || || | | | || | | | || | ||| ||||| ||| |||| |||||||||||| ||||| || ||||| ||||| |||||||||||| |||||||||| || |||||||||||||| |||||||||||||| | ||
-ttattcttctagcagttttttttcttctttatttttgttgtcctttgccatgtttgtagcatcgttttaacttgtgatttct-tgtc-atgtatgcttgcagTGTAAGTGTGTTTGGTGTCTCAGCAGAATCTATGCAGTGTTCTTATGATCCAAAAGGAAACAGTGTCCCCACTATTCTTTTGCTAATGCAGGACCGTCTA
upper sequence: Vv07s0104g01120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G17070.1 (Glycine max), 3'ss of exon 1
-tagattctactgaattc-cactttattcctatctctcctttggattcaattttctgaattttggttgagataccaacttttgtgtttatgtaattttgtagTGCAAGTGTGTTTGGCGTCTCTGCGGAATCAATGCAATGTTCTTATGATTCAAAAGGAAATAGCGTCCCCACTATTCTCTTGCTAATGCAGGAGAGGTTA
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ctgacttttattcttctagcaggttttttttttgtctttgtcttttcccatgtttgtagcatcgttttaacttgcgatttct-tgtcc-tgtatgcttgcagTGTAAGCGTGTTTGGGGTCTCAGCAGAATCTATGCAGTGTTCTTATGATCCAAAAGGAAACAGTGTCCCCACTATTCTCTTGCTAATGCAGGACCGTCTA
upper sequence: Vv07s0104g01120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G39280.1 (Glycine max), 3'ss of exon 1
--tagattctactgaattccactttattcctatctctcctttggattcaattttctgaattttggttgagataccaacttttgtgtttatgtaatt--ttgtagTGCAAGTGTGTTTGGCGTCTCTGCGGAATCAATGCAATGTTCTTATGATTCAAAAGGAAATAGCGTCCCCACTATTCTCTTGCTAATGCAGGAGAGGTTA
| ||| | ||| | | | |||||| | || ||| | || ||| || || | || | || | | | || | || ||| |||| ||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||| || |||||||||||||| |||||||||| ||| | |||
tagaaatttcatcgaactatgtacttattctatctgtatttaccatt---tcttatgagttatgagccatatgctaa-tgtgattttcccatcatcaattgcagTGTTAGTGTGTTTGGCGTCTCAGCAGAATCAATGCAGTGTTCCTATGATTCAAAAGGAAACAGTGTCCCCACTATTCTACTGCTAATGCAAGAGCGATTA
upper sequence: Vv07s0104g01120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G03100.1 (Arabidopsis thaliana), 3'ss of exon 1
-tagattctactgaattccact-ttattcctatctctcct-ttggattcaattttctgaattttggttgagataccaacttttgtgtttatgtaattttgtagTGCAAGTGTGTTTGGCGTCTCTGCGGAATCAATGCAATGTTCTTATGATTCAAAAGGAAATAGCGTCCCCACTATTCTCTTGCTAATGCAGGAGAGGTTA
|| ||| | |||| |||| | | ||| ||||| | || | || | || | | | | ||| |||| | |||| ||||||||||| || || |||||||| |||||||||||||||||| |||||||| || ||||| || ||||| || || ||||||||||| |
gtaatctct-caaaatttcactactgctttagaatctgaaactggatctgaaattgtagcttcttatttaatggtggattctc---tttgattaat---gcagTGTGAGTGTGTTTGGTGTATCGGCGGAATCGATGCAATGTTCTTATGATGAGAAAGGAAACAGTGTCCCAACGATTCTATTACTTATGCAGGAGAGACTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caattttctgaattttggttgagataccaacttttgtgtttatgtaattttgtagTGCAAGTGTGTTTGGCGTCTCTGCGGAATCAATGCAATGTTCTTATGATTCAAAAGGAAATAGCGTCCCCACTATTCTCTTGCTAATGCAGGAGAGGTTA
tttatgtaattttgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagattctactgaattccactttattcctatctctcctttggattcaattttctgaattttggttgagataccaacttttgtgtttatgtaattttgtagTGCAAGTGTGTTTGGCGTCTCTGCGGAATCAATGCAATGTTCTTATGATTCAAAAGGAAATAGCGTCCCCACTATTCTCTTGCTAATGCAGGAGAGGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - ctactga
- - - - - - - - - - - - - - - -ctctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataccaa