Sequence
atgc intronic sequence ATGC exonic sequencegtaattctttctgggaataatcaaagcccatttcttcaaattttaatggttgacttacatttttcctccatgatcagaaaccattttcacgtatatgactcaattgtaaattgcgattcagGATCTTAGTGTGGGGAGATGGGTATTACAATGGGGCAATCAAGACTAGGAAGACGGTGCAACCAATGGAGGTCAGCGCCGAGGAGGCGTCCCTCCAGAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0104g00090.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G16670.1 (Glycine max), 3'ss of exon 1
------------------------------------------------------gtaattctttctgggaataatc----aaagcccatttcttca--aattttaatggttgacttacatttttcctccatgatcaga--aaccattttcacgtatatgactc-----------aattgtaaattg---cgattcagGATCTTAGTGTGGGGAGATGGGTATTACAATGGGGCAATCAAGACTAGGAAGACGGTGCAACCAATGGAGGTCAGCGCCGAGGAGGCGTCCCTCCAGAGA
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gtacgtttagtagttattagttcactttatacacacaagttgtctcatatgataatgattcattaattaattactcttctaattaatgtttcctaattagtttctgtaaccgacacatgtatgcctatgagtgtgagagtgacacttgtaacaaattaaattttaaggtcatataattatatgttatattgatttagGATTCTGGTTTGGGGTGATGGTTACTACAATGGAGCAATTAAGACACGGAAGACGGTGCAACCAATGGAGGTGAGTGCTGAGGAGGCTTCTCTCCAAAGA
upper sequence: Vv07s0104g00090.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G03140.1 (Glycine max), 3'ss of exon 1
gtaattctttctgggaataatcaaagcccatttcttcaaattttaatggttgacttacatttttcctccatgatcagaaaccattttcacgt-atatgactcaattgtaaattgcgattcagGATCTTAGTGTGGGGAGATGGGTATTACAATGGGGCAATCAAGACTAGGAAGACGGTGCAACCAATGGAGGTCAGCGCCGAGGAGGCGTCCCTCCAGAGA
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---------------atgtactgtatgatgtatgtttgggtatgagt-----atatatgagtgtgacccttaacaagtta--attttaaggtcatgttatatattattttatgttaatttagGATTCTGGTTTGGGGTGATGGTTACTACAATGGAGCAATTAAAACACGGAAGACGGTGCAACCAATGGAGGTGAGTGCTGAAGAGGCTTCTCTCCAAAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tccatgatcagaaaccattttcacgtatatgactcaattgtaaattgcgattcagGATCTTAGTGTGGGGAGATGGGTATTACAATGGGGCAATCAAGACTAGGAAGACGGTGCAACCAATGGAGGTCAGCGCCGAGGAGGCGTCCCTCCAGAGA
aattgtaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattctttctgggaataatcaaagcccatttcttcaaattttaatggttgacttacatttttcctccatgatcagaaaccattttcacgtatatgactcaattgtaaattgcgattcagGATCTTAGTGTGGGGAGATGGGTATTACAATGGGGCAATCAAGACTAGGAAGACGGTGCAACCAATGGAGGTCAGCGCCGAGGAGGCGTCCCTCCAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG