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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtttcaaaagtctttaattagctttggattgatgatttccgtttgtttacccagaaaaggtggggaaaggaaagaaataagaaacttagacatttcattagaattttaagttgcagttttagaaaccggaatttgttgctatgattgcagGATTTACGGGCGTTTGGGAGGGATAAGGGGTGGTGCCCGTACTTTTTAGCACGGCACATGGTGCAATTTGCAAATGTGGTCGTTTATAGTTATCAGTACT

Basic information

species Vitis vinifera
transcript Vv07s0104g00060.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0104g00060.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G28290.1 (Glycine max), 3'ss of exon 1
gtatagtttcaaaagtctttaattagctttggattgatgatttccgtttgtttacccagaaaaggtggggaaaggaaagaaataagaaacttagacatttcattagaattttaagttgcagttttagaaaccggaatttgttgctatgattgcagGATTTACGGGCGTTTGGGAGGGATAAGGGGTGGTGCCCGTACTTTTTAGCACGGCACATGGTGCAATTTGCAAATGTGGTCGTTTATAGTTATCAGTACT
                                         ||  | || ||||      | | ||   | | ||       |       || ||  ||| | |  | || | |  ||     || ||||| | |   |||  ||  ||||| |||| ||  | |  | ||||| ||| |||||||||||||| |||| ||| ||||| || |||||||| ||||| || ||||| || ||||| |||||||| |
--------------------------------------tgcttttgcttttttaaattttagatgttctgtatggctgtgggt-------ttgga--ttttaatgaatttctgaaatg-----tttgaaactgaa---tgtgtctgcgattgtagGACTTGAGAGTATATGGGAAGGAGAAGGGGTGGTGCCCATACTATTTGGCACGACATATGGTGCAGTTTGCCAACGTGGTGGTGTATAGCTATCAGTATT

upper sequence: Vv07s0104g00060.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G09080.1 (Glycine max), 3'ss of exon 1
gtatagtttcaaaagtctttaattagctttggattgatgatttccgtttgtttacccagaaaaggtggggaaaggaaagaaataagaaacttagacatttcattagaattttaagttgcagttttagaaaccggaatttgttgctatgattgcagGATTTACGGGCGTTTGGGAGGGATAAGGGGTGGTGCCCGTACTTTTTAGCACGGCACATGGTGCAATTTGCAAATGTGGTCGTTTATAGTTATCAGTACT
                                               || ||||  |   |   ||     | ||       |    |  ||    |||| | |  | || | |  ||     || ||||| | |   |||  || |||||| |||| ||  | || | ||||| ||| ||||||||||| || |||| ||||||||| || |||||||| ||||| || ||||| || ||||| |||||||| |
-----------------------------------------------ttttttaaactttagttgttccttatggttgtgcttttttattttttggattttaatgaatttctgaaatg-----tttgaaactgaa---tgtgtctgtgattgtagGACTTGAGAGCATATGGGAAGGAGAAGGGGTGGTGTCCATACTATTTAGCACGACATATGGTGCAGTTTGCCAACGTGGTGGTGTATAGCTATCAGTATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattagaattttaagttgcagttttagaaaccggaatttgttgctatgattgcagGATTTACGGGCGTTTGGGAGGGATAAGGGGTGGTGCCCGTACTTTTTAGCACGGCACATGGTGCAATTTGCAAATGTGGTCGTTTATAGTTATCAGTACT
      aattttaagtt  TA-rich tract