1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaaggaatcagtctttatatgcgggattctcttttcctcttcttctatctgaaaaaagcctagaacaatgacactggctgaattttggaattaaatgcagCCTGTGGAGTATGTCACTCTGATCTGCATGTTATCAAAGGAGAACTTCCATTTGCTAGCCCTTGTGTGGTGGGGCACGAGATAACGGGTGAGGTTGTTGA
species | Vitis vinifera |
transcript | Vv07s0031g03150.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCCACATGCCTCGCCCTAAGGCTGGAGAAGTTCTCATCAAAACCAAAG CCTGTGGAGTATGTCACTCTGATCTGCATGTTATCAAAGGAGAACTTCCATEST: gi|161715089|gb|FC063332.1|FC063332
genomic: TTTCCACATGCCTCGCCCTAAGGCTGGAGAAGTTCTCATCAAAACCAAAGgtcaaatctc ... ttaaatgcagCCTGTGGAGTATGTCACTCTGATCTGCATGTTATCAAAGGAGAACTTCCAT
EST: TTTCCACATGCCTCGCCCTAAGGCTGGAGAAGTTCTCATCAAAACCAAAG CCTGTGGAGTATGTCACTCTGATCTGCATGTTATCAAAGGAGAACTTCCATEST: gi|161718151|gb|FC065657.1|FC065657
genomic: TTTCCACATGCCTCGCCCTAAGGCTGGAGAAGTTCTCATCAAAACCAAAGgtcaaatctc ... ttaaatgcagCCTGTGGAGTATGTCACTCTGATCTGCATGTTATCAAAGGAGAACTTCCAT
EST: TTTCCACATGCCTCGCCCTAAGGCTGGAGAAGTTCTCATCAAAACCAAAG CCTGTGGAGTATGTCACTCTGATCTGCATGTTATCAAAGGAGAACTTCCTT
genomic: TTTCCACATGCCTCGCCCTAAGGCTGGAGAAGTTCTCATCAAAACCAAAGgtcaaatctc ... ttaaatgcagCCTGTGGAGTATGTCACTCTGATCTGCATGTTATCAAAGGAGAACTTCCAT
tatctgaaaaaagcctagaacaatgacactggctgaattttggaattaaatgcagCCTGTGGAGTATGTCACTCTGATCTGCATGTTATCAAAGGAGAACTTCCATTTGCTAGCCCTTGTGTGGTGGGGCACGAGATAACGGGTGAGGTTGTTGA
aattttggaattaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaggaatcagtctttatatgcgggattctcttttcctcttcttctatctgaaaaaagcctagaacaatgacactggctgaattttggaattaaatgcagCCTGTGGAGTATGTCACTCTGATCTGCATGTTATCAAAGGAGAACTTCCATTTGCTAGCCCTTGTGTGGTGGGGCACGAGATAACGGGTGAGGTTGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
aaaggaa
- - - - - - - - - - - - - - - - -ttcctct
- - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctga