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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctctctgttttttttttttcctaatttctttttctgttgaaattcaaatgttttttctttttcttatttagattaaattttttatttttcaatatttttggatgctctctgaattgggttatttatttatttgttgtttcagGATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACATGAACAAGAATTACAAATCATTTCTGAGGACTGTACATCAAAAAAG

Basic information

species Vitis vinifera
transcript Vv07s0031g03090.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351036166|gb|FQ464011.1|FQ464011
EST:     TTCATTCTCTGTATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAG                         GATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACA
genomic: TTCATTCTCTGTATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAGgtctctctct ... gttgtttcagGATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACA
EST: gi|110719627|gb|EE094919.1|EE094919
EST:     TTCATTCTCTGTATCTTCAGCTTCGCCCTTGGAATGCTTTTCACGAACAG                         GATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACA
genomic: TTCATTCTCTGTATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAGgtctctctct ... gttgtttcagGATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACA
EST: gi|351044383|gb|FQ452935.1|FQ452935
EST:     TTCATTCTCTGTATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAG                         GATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACA
genomic: TTCATTCTCTGTATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAGgtctctctct ... gttgtttcagGATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACA
EST: gi|351045775|gb|FQ440960.1|FQ440960
EST:     TTCATTCTCTGCATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAG                         GATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACA
genomic: TTCATTCTCTGTATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAGgtctctctct ... gttgtttcagGATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACA
EST: gi|161709635|gb|FC058015.1|FC058015
EST:     TTCATTCTCTGTATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAG                         GATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACA
genomic: TTCATTCTCTGTATCTTCAGCTTCGCCCTTGGGATGCTTTTCACGAACAGgtctctctct ... gttgtttcagGATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaatatttttggatgctctctgaattgggttatttatttatttgttgtttcagGATGTGGGTTGCACCCGAGTCCAACCGTCAGATGATCTCCACCCAGAGACATGAACAAGAATTACAAATCATTTCTGAGGACTGTACATCAAAAAAG
                                              ttgtttc  CT-rich tract
                               ttatttatttatttgt  TA-rich tract