Sequence
atgc intronic sequence ATGC exonic sequence...gggactttacactttactggcaaaattattgatggtgttaaggttttgttttttgacatgggaatcttactgaatgctatttttgttgtttaaaatgcagGTTCCAATATCAAATATCAGGAATTTCTGCATAATTGCTCATATTGATCATGGGAAATCAACTTTAGCAGATAAGTTGCTGCAAATGACGGGTACGGTAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G16700.1 (Glycine max), 3'ss of exon 1
gggactttacactttactggcaaaattattgatggtgttaaggttttgttttttgacatgggaatcttactgaatgctatttttgttgtttaaaatgcagGTTCCAATATCAAATATCAGGAATTTCTGCATAATTGCTCATATTGATCATGGGAAATCAACTTTAGCAGATAAGTTGCTGCAAATGACGGGTACGGTAC
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---gtatcat-cgctactagccactctcgtgtttttttccaaattgcccctcgtt-cgtagaatcgtagctaaaagctactttggtt---tgtgttttagGTGCCGGTGCGTAATATAAGGAACTTCTGCATCATTGCGCATATTGACCACGGGAAATCCACGTTGGCGGATAAGTTGCTTCAGGTTACCGGCACGGTGC
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA04G38360.1 (Glycine max), 3'ss of exon 1
gggactttacactttactggcaaaattattgatggtgttaaggttttgttttttgacatgggaatcttactgaatgctatttttgtt---gtttaaaatgcagGTTCCAATATCAAATATCAGGAATTTCTGCATAATTGCTCATATTGATCATGGGAAATCAACTTTAGCAGATAAGTTGCTGCAAATGACGGGTACGGTAC
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-gtatcatcgctactact--cactatttctcgtgtttttcccaaattagccctcgtt-cgtagctactagtacaagctcgtttggttcggttttggttttcagGTGCCGGTGCGTAATATAAGGAACTTCTGCATCATTGCGCATATTGACCACGGGAAATCCACGTTGGCGGATAAGTTGCTTCAGGTTACCGGCACGGTGC
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G08650.1 (Arabidopsis thaliana), 3'ss of exon 1
gggactttacactttactggcaaaattattgatggtgttaaggttttgttttttgacatgggaatcttactgaatgctatttttgttgtttaaaatgcagGTTCCAATATCAAATATCAGGAATTTCTGCATAATTGCTCATATTGATCATGGGAAATCAACTTTAGCAGATAAGTTGCTGCAAATGACGGGTACGGTAC
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gtcgggttctgttttgttctctctcttcatccgtgtgccgaaacttgagaa---gaatttggattttttttgaa-actgaatttgttatgaaattcgcagGTTCCAATTTCGAACATCAGGAATTTTAGTATTATAGCTCATATTGATCATGGGAAATCTACGTTAGCGGATAAGTTGCTTCAGGTGACTGGTACTGTTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|46917805|gb|CN547134.1|CN547134EST: GTCTCTTGAAG GTTCCAATATCGAATATCAGGAATTTCTGCATAATTGCTCATATTGATCAT
genomic: GTCTCTTGAAGgtttcttttt ... taaaatgcagGTTCCAATATCAAATATCAGGAATTTCTGCATAATTGCTCATATTGATCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttttttgacatgggaatcttactgaatgctatttttgttgtttaaaatgcagGTTCCAATATCAAATATCAGGAATTTCTGCATAATTGCTCATATTGATCATGGGAAATCAACTTTAGCAGATAAGTTGCTGCAAATGACGGGTACGGTAC
atcttac putative branch site (score: 3)
tatttttgttgtttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gggactttacactttactggcaaaattattgatggtgttaaggttttgttttttgacatgggaatcttactgaatgctatttttgttgtttaaaatgcagGTTCCAATATCAAATATCAGGAATTTCTGCATAATTGCTCATATTGATCATGGGAAATCAACTTTAGCAGATAAGTTGCTGCAAATGACGGGTACGGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - ggcaaaa
- - - - - - - - - - - - - - - gatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -acatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgct