Sequence
atgc intronic sequence ATGC exonic sequence...aggctttattttgaaaataaaaggaaaaatttcatttcacctggtagtggtatatgataggtctgtgaaggtgatgggggagatggtgtgatgtatacagGTGGGGCCAAGATCCAAAAGGGACAGGGAGAGGTTTCCACCAAACAATGTGCTGCTGATGCTTGCTGGGGCGGGGCTGCTGTGGTTGGGATGGGCAGGGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02990.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G33010.1 (Glycine max), 3'ss of exon 1
aggctttattttgaaaataaaaggaaa--aatttcatttcacctggtagtggtatatgataggtctgtgaagg-tgatgggg----gagatggtgtgatgtatacagGTGGGGCCAAGATCCAAAAGGGACAGGGAGAGGTTTCCACCAAACAATGTGCTGCTGATGCTTGCTGGGGCGGGGCTGCTGTGGTTGGGATGGGCAGGGT
|||| || || | || | || || || || | | | | | | | | | | || || || || | || || | | |||||||||||||||||| || | |||||| ||||| || || |||||||||||| |||| | | | || ||||| ||||| || ||| ||||||||||||| |
----gttatcatggaatttgaaagcaacgaaattaatctga---agacaaagaacaaggtggaccgatggagaatggtgaaatgataaaattttgaaaatgaaacagGTGGGGCCAAGATCGAAGAAGGACAGAGAGAGATTCCCGCCAAACAATGTGTTGCTAACGTTGGCGGGGGCAGGGCTACTATGGATGGGATGGGCAGGTT
upper sequence: Vv07s0031g02990.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S109_32V6.1 (Physcomitrella patens), 3'ss of exon 2
------------------------------aggctttattttgaaaataaaaggaaaaatttcatttcacctggtagtggtatatgataggtctgtgaaggtgatgggggagatggtgtgatgtatacagGTGGGGCCAAGATCCAAAAGGGACAGGGAGAGGTTTCCACCAAACAATGTGCTGCTGATGCTTGCTGGGGCGGGGCTGCTGTGGTTGGGATGGGCAGGGT
| ||| | || | | | | || | ||| || | | | | |||| ||| | ||| | || | | | ||||||| ||||| || | | ||| | ||| | || || || ||||| || |||| ||||||||||||||||| ||||| ||| |||||||||| ||||
gtataaattttgtaatatacacctcaaagcatgctacagttaggcatcgtcgtggtcgagttgtgtacactgcataaaactttcttagaggtttgtttacgtgcct----aactgtgctcaattgtacagGTTGGGCCGAGGCTGACTAAGGATATAGAGCGTTTCCCTCCTAACAACGTCTTGCTCATGCTTGCTGGGGCGGGTCTGCTATGGATGGGATGGGCTGGGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtggtatatgataggtctgtgaaggtgatgggggagatggtgtgatgtatacagGTGGGGCCAAGATCCAAAAGGGACAGGGAGAGGTTTCCACCAAACAATGTGCTGCTGATGCTTGCTGGGGCGGGGCTGCTGTGGTTGGGATGGGCAGGGT
tatatgata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aggctttattttgaaaataaaaggaaaaatttcatttcacctggtagtggtatatgataggtctgtgaaggtgatgggggagatggtgtgatgtatacagGTGGGGCCAAGATCCAAAAGGGACAGGGAGAGGTTTCCACCAAACAATGTGCTGCTGATGCTTGCTGGGGCGGGGCTGCTGTGGTTGGGATGGGCAGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - -aaaataa
- - - - - - - - - - - ggaaaaa
- - - - - - - - - - - - - - - - - - - - - ggtagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgtg