1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttcctttttttatttttcgtatgttttctcagctaccaactatatggaaactgattctcctgttatcctgtgtacgggaaaaattcccaatcttatgtagGGGTTTCAGGTAGATCAAAACAATGGGGGATGCTATTTCCTGGTTCTTCGAGAAAACTTGCAATCAATATGTCAATACTTATGAACTTCCAGAGCAAAGG
species | Vitis vinifera |
transcript | Vv07s0031g02690.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATGGCACAGATGGCTCTCTCTGCGTCACCAACACTCACTCTCTTCAATA GGGTTTCAGGTAGATCAAAACAATGGGGGATGCTATTTCCTGGTTCTTCGAEST: gi|71865150|gb|DT014205.1|DT014205
genomic: AATGGCACAGATGGCTCTCTCTGCGTCACCAACACTCACTCTCTTCAATAgtaagttgtc ... tcttatgtagGGGTTTCAGGTAGATCAAAACAATGGGGGATGCTATTTCCTGGTTCTTCGA
EST: AATGGCACAGATGGCTCTCTCTGCGTCACCAACACTCACTCTCTTCAATA GGGTTTCAGGTAGATCAAAACAATGGGGGATGCTATTTCCTGGTTCTTCGAEST: gi|71862339|gb|DT011394.1|DT011394
genomic: AATGGCACAGATGGCTCTCTCTGCGTCACCAACACTCACTCTCTTCAATAgtaagttgtc ... tcttatgtagGGGTTTCAGGTAGATCAAAACAATGGGGGATGCTATTTCCTGGTTCTTCGA
EST: AATGGCACAGATGGCTCTCTCTGCGTCACCAACACTCACTCTCTTCAATA GGGTTTCAGGTAGATCAAAACAATGGGGGATGCTATTTCCTGGTTCTTCGAEST: gi|71862681|gb|DT011736.1|DT011736
genomic: AATGGCACAGATGGCTCTCTCTGCGTCACCAACACTCACTCTCTTCAATAgtaagttgtc ... tcttatgtagGGGTTTCAGGTAGATCAAAACAATGGGGGATGCTATTTCCTGGTTCTTCGA
EST: AATGGCACAGATGGCTCTCTCTGCGTCACCAACACTCACTCTCTTCAATA GGGTTTCAGGTAGATCAAAACAATGGGGGATGCTATTTCCTGGTTCTTCGAEST: gi|71855322|gb|DT004377.1|DT004377
genomic: AATGGCACAGATGGCTCTCTCTGCGTCACCAACACTCACTCTCTTCAATAgtaagttgtc ... tcttatgtagGGGTTTCAGGTAGATCAAAACAATGGGGGATGCTATTTCCTGGTTCTTCGA
EST: AAGGGCACAGATGGCTCTCTCTGCGTCACCAACACTCACTCTCTTCAATA GGGTTTCAGGTAGATCAAAACAATGGGGGATGCTATTTCCTGGTTCTTCGAEST: gi|71860119|gb|DT009174.1|DT009174
genomic: AATGGCACAGATGGCTCTCTCTGCGTCACCAACACTCACTCTCTTCAATAgtaagttgtc ... tcttatgtagGGGTTTCAGGTAGATCAAAACAATGGGGGATGCTATTTCCTGGTTCTTCGA
EST: TCTCTCTGCGTCACCAACACTCACTCTCTTCAATA GGGTTTCAGGTAGATCAAAACAATGGGGGATGCTATTTCCTGGTTCTTCGAEST: gi|71863748|gb|DT012803.1|DT012803
genomic: TCTCTCTGCGTCACCAACACTCACTCTCTTCAATAgtaagttgtc ... tcttatgtagGGGTTTCAGGTAGATCAAAACAATGGGGGATGCTATTTCCTGGTTCTTCGA
EST: AATGGCACAGATGGCTCTCTCTGCGTCACCAACACTCACTCTCTTCAATA GGGTTTCAGGTAGATCAAAACAATGGGGGATGCTATTTCCTGGTTCTTCGA
genomic: AATGGCACAGATGGCTCTCTCTGCGTCACCAACACTCACTCTCTTCAATAgtaagttgtc ... tcttatgtagGGGTTTCAGGTAGATCAAAACAATGGGGGATGCTATTTCCTGGTTCTTCGA
ggaaactgattctcctgttatcctgtgtacgggaaaaattcccaatcttatgtagGGGTTTCAGGTAGATCAAAACAATGGGGGATGCTATTTCCTGGTTCTTCGAGAAAACTTGCAATCAATATGTCAATACTTATGAACTTCCAGAGCAAAGG
aactgat putative branch site (score: 3)
aaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcctttttttatttttcgtatgttttctcagctaccaactatatggaaactgattctcctgttatcctgtgtacgggaaaaattcccaatcttatgtagGGGTTTCAGGTAGATCAAAACAATGGGGGATGCTATTTCCTGGTTCTTCGAGAAAACTTGCAATCAATATGTCAATACTTATGAACTTCCAGAGCAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - -ccaacta
- - - - - - - - - - - - - - - - - - - - - - - -aaactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcccaa