Sequence
atgc intronic sequence ATGC exonic sequence...ttcatttattttatgcttataagaaagactacacacgcatgtttaatacttcatgatgtgtgcatttttccgtagatataaattgttgacctttcttcagAAGGATTATCTTCGAAGGATATCTGTGAAGATGCTGTCAATACATACAGCGCCTCAGAATACTGCAGCTAATGTTTCGCCTTCAAACTCAGTTGATACTG
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atacttcatgatgtgtgcatttttccgtagatataaattgttgacctttcttcagAAGGATTATCTTCGAAGGATATCTGTGAAGATGCTGTCAATACATACAGCGCCTCAGAATACTGCAGCTAATGTTTCGCCTTCAAACTCAGTTGATACTG
tgttgac putative branch site (score: 3)
cctttcttc CT-rich tract
tagatataaattgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcatttattttatgcttataagaaagactacacacgcatgtttaatacttcatgatgtgtgcatttttccgtagatataaattgttgacctttcttcagAAGGATTATCTTCGAAGGATATCTGTGAAGATGCTGTCAATACATACAGCGCCTCAGAATACTGCAGCTAATGTTTCGCCTTCAAACTCAGTTGATACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - gaaagac
- - - - - - - - - - - - - - - -cacacgc
- - - - - - - - - - - - - - - - - - - - - - - - cttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgac