1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtgggctgagatgggaagatctaaaaggaaaaaaaagagaacatggaaaatcacccattacatgttagagattgaaatttaaactatttctttgtgatagGGTTGCTTTCTGTGGATTTTGAAGATGGTGCTGATTCCTCTTCTGAAATTCTTGTTCATGG
species | Vitis vinifera |
transcript | Vv07s0031g02260.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATCTTGATCGTCGGATCCTCCTCCGTCGGTAAACGTACTCTCCTCTCCC GGTTGCTTTCTGTGGATTTTGAAGATGGTGCTGATTCCTCTTCTGAAATTCEST: gi|161720435|gb|FC070208.1|FC070208
genomic: AATCTTGATCGTCGGATCCTCCTCCGTCGGTAAACGTACTCTCCTCTCCCgtaagtttct ... tttgtgatagGGTTGCTTTCTGTGGATTTTGAAGATGGTGCTGATTCCTCTTCTGAAATTC
EST: AATCTTGATCGTCGGATCCTCCTCCGTCGGTAAACGTACTCTCCTCTCCC GGTTGCTTTCTGTGGATTTTGAAGATGGTGCTGATTCCTCTTCTGAAATTCEST: gi|30303017|gb|CB979811.1|CB979811
genomic: AATCTTGATCGTCGGATCCTCCTCCGTCGGTAAACGTACTCTCCTCTCCCgtaagtttct ... tttgtgatagGGTTGCTTTCTGTGGATTTTGAAGATGGTGCTGATTCCTCTTCTGAAATTC
EST: AATCTTGATCGTCGGATCCTCCTCCGTCGGTAAACGTACTCTCCTCTCCC GGTTGCTTTCTGTGGATTTTGAAGATGGTGCTGATTCCTCTTCTGAAATTC
genomic: AATCTTGATCGTCGGATCCTCCTCCGTCGGTAAACGTACTCTCCTCTCCCgtaagtttct ... tttgtgatagGGTTGCTTTCTGTGGATTTTGAAGATGGTGCTGATTCCTCTTCTGAAATTC
gaaaatcacccattacatgttagagattgaaatttaaactatttctttgtgatagGGTTGCTTTCTGTGGATTTTGAAGATGGTGCTGATTCCTCTTCTGAAATTCTTGTTCATGG
ctatttcttt CT-rich tract
attgaaatttaaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggctgagatgggaagatctaaaaggaaaaaaaagagaacatggaaaatcacccattacatgttagagattgaaatttaaactatttctttgtgatagGGTTGCTTTCTGTGGATTTTGAAGATGGTGCTGATTCCTCTTCTGAAATTCTTGTTCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- gggctga
- - - - - - - - - - - aaaagga
- - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - gagaaca
- - - - - - - - - - - - - - - - - - - - - -tggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - tcaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gattgaaa