1 5' 3' | 2 5' 3' | 3 5' 3' |
...tctttttatatatgctgtctccatctcttgcattggctttcccaattgatcttaaatttattttcttcagtacctaatgcttaccttttttaacggacagAAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCTGCTCTTCATGAGATTGAAGTCCTTTCAGCTATTGCTAATGGTGACCCCT
species | Vitis vinifera |
transcript | Vv07s0031g02130.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCT AAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCTEST: gi|161721479|gb|FC070457.1|FC070457
genomic: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCTgtacgttctt ... taacggacagAAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCT
EST: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCT AAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCTEST: gi|110380651|gb|EC945934.1|EC945934
genomic: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCTgtacgttctt ... taacggacagAAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCT
EST: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCT AAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCTEST: gi|110718392|gb|EE095169.1|EE095169
genomic: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCTgtacgttctt ... taacggacagAAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCT
EST: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCT AAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCTEST: gi|161713794|gb|FC064359.1|FC064359
genomic: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCTgtacgttctt ... taacggacagAAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCT
EST: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCT AAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCTEST: gi|294966786|gb|GW837805.1|GW837805
genomic: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCTgtacgttctt ... taacggacagAAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCT
EST: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCT AAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCTEST: gi|30134233|gb|CB919571.1|CB919571
genomic: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCTgtacgttctt ... taacggacagAAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCT
EST: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCT AAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCTEST: gi|161717661|gb|FC067899.1|FC067899
genomic: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCTgtacgttctt ... taacggacagAAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCT
EST: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCT AAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCTEST: gi|110712263|gb|EE089688.1|EE089688
genomic: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCTgtacgttctt ... taacggacagAAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCT
EST: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCT AAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCTEST: gi|110720865|gb|EE097171.1|EE097171
genomic: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCTgtacgttctt ... taacggacagAAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCT
EST: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCT AAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGCACAATTTGCTCAAGCT
genomic: GTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCTgtacgttctt ... taacggacagAAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCT
ttgatcttaaatttattttcttcagtacctaatgcttaccttttttaacggacagAAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCTGCTCTTCATGAGATTGAAGTCCTTTCAGCTATTGCTAATGGTGACCCCT
ttttaac putative branch site (score: 2)
tgcttacctttttt CT-rich tract
ttaaatttattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttttatatatgctgtctccatctcttgcattggctttcccaattgatcttaaatttattttcttcagtacctaatgcttaccttttttaacggacagAAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCTGCTCTTCATGAGATTGAAGTCCTTTCAGCTATTGCTAATGGTGACCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - tatgctg
- - - - - - - - - - ccatctc
- - - - - - - - - - - - - - tgcattg
- - - - - - - - - - - - - - - - - - ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaatgc