Sequence
atgc intronic sequence ATGC exonic sequence...catatctatatatagttgaatagtgaacttcctaaaatctttatcactttttggttaaattttcttattcttattctgttctatatatatgtataaatagTTGGAGAAGGTTCGGTGTTGAATACGAATACAACGGCAGCCAGTGAGAGTTCATTAATGGTTCCCACATATGAGTATGTTGATACGTACAGAGGAGAGCC
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161710051|gb|FC060243.1|FC060243EST: TTCTAGAGCTTTTGGCGATCTTTCACCTGGAGGATCATCCTCTTTCAGAG TTGGAGAAGGTTCAGTGTTGAATACGAATACCACGGCAGCCAGTGAGA
genomic: TTCTAGAGCTTTTGGCGATCTTTCACATGGAGGATCATCATCTTTCAGAGgtggctctct ... gtataaatagTTGGAGAAGGTTCGGTGTTGAATACGAATACAACGGCAGCCAGTGAGA
EST:
gi|161714439|gb|FC063859.1|FC063859EST: TTCTAGAGCTTTTGGCGATCTTTCACATGGAGGATCATCATCTTTCAGAG TTGGAGAAGGTTCGGTGTTGAATACGAATACAACGGCAGCCAGTGAGAGTT
genomic: TTCTAGAGCTTTTGGCGATCTTTCACATGGAGGATCATCATCTTTCAGAGgtggctctct ... gtataaatagTTGGAGAAGGTTCGGTGTTGAATACGAATACAACGGCAGCCAGTGAGAGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actttttggttaaattttcttattcttattctgttctatatatatgtataaatagTTGGAGAAGGTTCGGTGTTGAATACGAATACAACGGCAGCCAGTGAGAGTTCATTAATGGTTCCCACATATGAGTATGTTGATACGTACAGAGGAGAGCC
ttaaattttcttattc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catatctatatatagttgaatagtgaacttcctaaaatctttatcactttttggttaaattttcttattcttattctgttctatatatatgtataaatagTTGGAGAAGGTTCGGTGTTGAATACGAATACAACGGCAGCCAGTGAGAGTTCATTAATGGTTCCCACATATGAGTATGTTGATACGTACAGAGGAGAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - cctaaaa