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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttcctttatatccatttatttaacactaaccatttgttttttttttccccctctttctgggttccctgcttgtgtgtttttgcttctggttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTGACAACCGTAGATATTGTGGCATACCTGCAG

Basic information

species Vitis vinifera
transcript Vv07s0031g01940.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71875131|gb|DT024186.1|DT024186
EST:     CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|110687382|gb|EE064745.1|EE064745
EST:     CCATGAACCAGCAACGCTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|110421482|gb|EC987779.1|EC987779
EST:     CCATGAACCAGCAACGCTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|77586419|gb|DV222334.1|DV222334
EST:     CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|351048139|gb|FQ442109.1|FQ442109
EST:     CCATGAACCAGCAACGCTTGTCTTTCCAAGCTGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|18458484|gb|BM436762.1|BM436762
EST:     CCATGAACCAGCAACGCTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|110403773|gb|EC969525.1|EC969525
EST:     ATGAACCAGCAACGTTTGTCTTTCCAAGCCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: ATGAACCAGCAACGTTTGTCTTTCCAAG-CCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|351015120|gb|FQ444409.1|FQ444409
EST:     CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|30252551|gb|CB970102.1|CB970102
EST:     CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|349824330|gb|FQ417677.1|FQ417677
EST:     CCATGAACCAGCAACGCTTGTCTTTCCAAGCCGGTGAGCGTCGCGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|110404932|gb|EC970459.1|EC970459
EST:     CCATGAACCAGCAACGCTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|352785333|gb|FQ477547.1|FQ477547
EST:     CCATGAACCAGCAACGCTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|110407427|gb|EC973027.1|EC973027
EST:     CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|351034323|gb|FQ448120.1|FQ448120
EST:     CCATGAACCAGCAACGCTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGGAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|110416599|gb|EC982590.1|EC982590
EST:     CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|22012483|gb|BQ797517.1|BQ797517
EST:     CCATGAACCAGCAACGTTTGTC-TTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|110409573|gb|EC975239.1|EC975239
EST:     CCATGAACCAGCAACGCTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|110731365|gb|EE105715.1|EE105715
EST:     CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|110732708|gb|EE108241.1|EE108241
EST:     CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|351032338|gb|FQ461591.1|FQ461591
EST:     CCATGAACCAGCAACGCTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|110365888|gb|EC929413.1|EC929413
EST:     CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|32458495|gb|CD799669.1|CD799669
EST:     AGCGTCACGCGCTG                         GAGAAACTTTATCGATGGGTTTTTTGAGACAACAGGAAGAGGGATCAAGAG
genomic: AGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGG--TTTTGAGACAACAGGAAGAGGGATCAAGAG
EST: gi|71858872|gb|DT007927.1|DT007927
EST:     CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAGCTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|351032189|gb|FQ460446.1|FQ460446
EST:     CCATGAACCAGCAACGCTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|110731616|gb|EE106183.1|EE106183
EST:     CCATGAACCAGCAACGCTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|110730557|gb|EE107769.1|EE107769
EST:     CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|351028249|gb|FQ426150.1|FQ426150
EST:     CCATGAACCAGCAACGCTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|349816437|gb|FQ403812.1|FQ403812
EST:     CCATGAACCAGCAACGCTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
EST: gi|110723647|gb|EE101197.1|EE101197
EST:     CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTG                         GAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG
genomic: CCATGAACCAGCAACGTTTGTCTTTCCAAGCCGGTGAGCGTCACGCGCTGgtatgagctc ... gttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccccctctttctgggttccctgcttgtgtgtttttgcttctggttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTGACAACCGTAGATATTGTGGCATACCTGCAG
                               tgttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttcctttatatccatttatttaacactaaccatttgttttttttttccccctctttctgggttccctgcttgtgtgtttttgcttctggttttggtagGAGAAACTTTATCAATGGGTTTTGAGACAACAGGAAGAGGGATCAAGAGTGACAACCGTAGATATTGTGGCATACCTGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - -ccattta
- - - - - - - - - - - - -cactaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttct