Sequence
atgc intronic sequence ATGC exonic sequence...ttttgaaacatgtactagttttaatgaatttgtaaattgttttaaagtaatagtcctttgactgttaataaatagataaactgatttatatttgctgcagAAAGATAGCAATGCTGTTAAAGAGGCACTTGATCAGCTGAGAGAAGTTGGTTGGGCCAAGAAATGGAGTTCTCAGCCATATGTTTCGCGCCGTATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G14970.1 (Glycine max), 3'ss of exon 1
ttttgaaacatgtactagttttaatgaatttgtaaat-tgttttaaagtaatagtcctttgactgttaataaatagataaactgatttata--tttgct---gcagAAAGATAGCAATGCTGTTAAAGAGGCACTTGATCAGCTGAGAGAAGTTGGTTGGGCCAAGAAATGGAGTTCTCAGCCATATGTTTCGCGCCGTATG
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-----atgcctatagacaattcaacgtggacacaaacatgcccttactgtctagctttagagctgcttcttgttaggtgaa-tgatagataggcttgtttgtgcagAAAGACAGTGATGCTGTTAAAGAGGCACTTAATCAGCTTAGTGAAGTTGGTTGGGCCAAGAAATGGAGTTCTCAGCCATATGTTTCACGTCGTACG
upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G31720.1 (Glycine max), 3'ss of exon 1
---ttttgaaacatgtactagttttaatgaatttgtaaattgttttaaagtaatagtcctttgactg-ttaataaatagataaactgatttatatttgctgcagAAAGATAGCAATGCTGTTAAAGAGGCACTTGATCAGCTGAGAGAAGTTGGTTGGGCCAAGAAATGGAGTTCTCAGCCATATGTTTCGCGCCGTATG
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atgtttctagacaattcaacgtggaaacaaacttgcac-ttactgtctagctttggagctgctactggttaggtaaataatagataggcttgt--ttg-tgcagAAAGACAGTGATGCTGTTAAAGAGGCACTTAATCAGCTTAGTGAAGTTGGTTGGGCCAAGAAATGGAGTTCTCAGCCATATGTTTCATGTCGTACG
upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G21960.1 (Arabidopsis thaliana), 3'ss of exon 1
ttttgaaaca-tgtactagttttaatgaatttgtaaattgttttaaagtaata-gtcctttgactgttaataaatagataaactgatttatatttgctgcagAAAGATAGCAATGCTGTTAAAGAGGCACTTGATCAGCTGAGAGAAGTTGGTTGGGCCAAGAAATGGAGTTCTCAGCCATATGTTTCGCGCCGTATG
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-gtcaattcagttcacaacctttacatgctttacttcttgattcgatgaactctgcagttaaaacataattctgaaagtgggatcatttgt---tgatgcagAAAGATAGTAATGGTGTTAAGGAAGCTCTCGATAAATTGAGTGAAGAAGGTTGGGCTAAGAAATGGAGCTCCCAGCCGTATCTTTCGCGCCGTACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtaatagtcctttgactgttaataaatagataaactgatttatatttgctgcagAAAGATAGCAATGCTGTTAAAGAGGCACTTGATCAGCTGAGAGAAGTTGGTTGGGCCAAGAAATGGAGTTCTCAGCCATATGTTTCGCGCCGTATG
aactgat putative branch site (score: 3)
tgttaataaatagata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttgaaacatgtactagttttaatgaatttgtaaattgttttaaagtaatagtcctttgactgttaataaatagataaactgatttatatttgctgcagAAAGATAGCAATGCTGTTAAAGAGGCACTTGATCAGCTGAGAGAAGTTGGTTGGGCCAAGAAATGGAGTTCTCAGCCATATGTTTCGCGCCGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - catgtac
- - - - - - - - - - - - - - - - - - - - - -aaagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaac