Sequence
atgc intronic sequence ATGC exonic sequence...atcataaactaatatatgaacagacttgatgtactcagtacacctaataaatatcatcccaacattgcatacatgttctaacttttcattatgtacacagGTCAATGTTGTTGAAGGGAAGATGCAGTATTTGTTTGATGAGAATGGCAAGCGCTATCTTGATGCCTTTGCTGGAATAGTTACTGTGTCATGTGGGCATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01330.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G02440.1 (Glycine max), 3'ss of exon 1
---atcataaactaatatatgaacagacttgatgtactcagtacacctaataaatatcatcccaacattgcatacatgttctaacttttcattatgtacacagGTCAATGTTGTTGAAGGGAAGATGCAGTATTTGTTTGATGAGAATGGCAAGCGCTATCTTGATGCCTTTGCTGGAATAGTTACTGTGTCATGTGGGCATT
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aaatttattgagaattacaaaattataaataaaat--ttattaaatatga-aaagagtgccacatatttttgtaatttttaacaattttttttgtttatatagCTTAACATTGTAGAGGGCATGATGCAACATCTATTTGATGAGAATGGCAGGCGTTATCTTGATGCTTTTGCTGGAATAGTTACTATTTCTTGTGGACATT
upper sequence: Vv07s0031g01330.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G36000.3 (Glycine max), 3'ss of exon 1
atcataaactaatatatgaacagacttgatgtactcagtacacctaataaatatcat---cccaacattgcatacatgttctaacttttcatta-tgtacacagGTCAATGTTGTTGAAGGGAAGATGCAGTATTTGTTTGATGAGAATGGCAAGCGCTATCTTGATGCCTTTGCTGGAATAGTTACTGTGTCATGTGGGCATT
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---gttaaaaagtgtgt-aactgacttttctcgataagtaaattagtaaaatacagaggacttctcactgagaaaaccatttttttgtttatgactttatgtagCTCAACATTGTGGAGGGCAAGATGCAATATCTATTCGATGAGAATGGTAGGCGTTATCTTGATGCTTTTGCTGGAATAGTTACTATCTCCTGTGGACATT
upper sequence: Vv07s0031g01330.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G14850.1 (Glycine max), 3'ss of exon 1
----atcata-aactaatatatgaacagacttgatgtactcagtacacctaataaatatcatcccaacattgcatacatgttctaacttttcattatgtacacagGTCAATGTTGTTGAAGGGAAGATGCAGTATTTGTTTGATGAGAATGGCAAGCGCTATCTTGATGCCTTTGCTGGAATAGTTACTGTGTCATGTGGGCATT
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gaaaatcatatagtcccttgatgtctctttttcattgatttgtttatttcaagtaattatgccttgcaattg-aggtgtgattcaaattttgaatgtata----gCTGAATATCGTGGAAGGGAAGATGCAATATCTGTATGATGATAGTGGGAGGCGTTACCTTGATGCATTTGCGGGGATAGTTACTGTTTCTTGCGGACATT
upper sequence: Vv07s0031g01330.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G31630.1 (Glycine max), 3'ss of exon 1
-atcata-aactaatatatgaacagacttgatgtactcagtacacctaataaatatcatcccaacattgcatacatgttctaacttttcattatgtacacagGTCAATGTTGTTGAAGGGAAGATGCAGTATTTGTTTGATGAGAATGGCAAGCGCTATCTTGATGCCTTTGCTGGAATAGTTACTGTGTCATGTGGGCATT
|||||| | | ||| || || | | || | ||| |||| | |||| || || | || |||| | | ||| || | ||| | || |||||||||||||| ||| | | |||||| | ||| | ||| || |||||||| ||||| |||||||||||||| || || || ||||
aatcatatagtcccttcatgtctctttttcat-cattttgtttatttaagaaattatgccttgtaattg-atgtgtgattcaaattttgaatgtgtgtgtagCTGAATATCGTGGAAGGGAAGATGCAATATCTTTATGATGATAGTGGGAGGCGTTACCTTGATGCATTTGCGGGAATAGTTACTGTTTCTTGCGGACATT
upper sequence: Vv07s0031g01330.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G39660.1 (Arabidopsis thaliana), 3'ss of exon 1
---atcataaact--aatatatgaacagacttgatgtactcagtacacctaataaatatcatcccaacattgcatacatgttctaacttttcattatgtacacagGTCAATGTTGTTGAAGGGAAGATGCAGTATTTGTTTGATGAGAATGGCAAGCGCTATCTTGATGCCTTTGCTGGAATAGTTACTGTGTCATGTGGGCATT
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cgattcattagctcccgaagactaagaggatttgtggacttagaa-gccagcttgatg--atccatggatctctgat-tattcagtgttgatgttatgt-tgcagCTTAACATCGTTGAAGGGAAGATGCAGTACTTGTATGATGAGAGTGGTAGGCGATATCTGGATGCCTTTGCTGGAATAGTCACTGTGTCGTGCGGTCACT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aataaatatcatcccaacattgcatacatgttctaacttttcattatgtacacagGTCAATGTTGTTGAAGGGAAGATGCAGTATTTGTTTGATGAGAATGGCAAGCGCTATCTTGATGCCTTTGCTGGAATAGTTACTGTGTCATGTGGGCATT
ttctaac putative branch site (score: 1)
taacttttcattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atcataaactaatatatgaacagacttgatgtactcagtacacctaataaatatcatcccaacattgcatacatgttctaacttttcattatgtacacagGTCAATGTTGTTGAAGGGAAGATGCAGTATTTGTTTGATGAGAATGGCAAGCGCTATCTTGATGCCTTTGCTGGAATAGTTACTGTGTCATGTGGGCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - -aaactaa
- - - - - - - - -gaacaga
- - - - - - - - - - - - cttgatg
- - - - - - - - - - - - - - - - - - - - cacctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -tcatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcataca