1 5' 3' | 2 5' 3' | 3 5' 3' |
...aatctttgttgtttttgtctcgtgttttgatctgagatccaacggctgggacagtggcagacggaatctaacggtcatcgcgtcatcttcctgtttgcagGTTAAATTTTGCCGTACCAATGGAGGTTAACCATGGTTCACCCCGATTAACAGTTAACCAGAGCACGCTAAAGTGCGCTGGTGAAGCTTTGGTCACGGTG
species | Vitis vinifera |
transcript | Vv07s0031g01300.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ctgggacagtggcagacggaatctaacggtcatcgcgtcatcttcctgtttgcagGTTAAATTTTGCCGTACCAATGGAGGTTAACCATGGTTCACCCCGATTAACAGTTAACCAGAGCACGCTAAAGTGCGCTGGTGAAGCTTTGGTCACGGTG
atctaac putative branch site (score: 2)
tcatcttcctgttt putative PPT
aatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatctttgttgtttttgtctcgtgttttgatctgagatccaacggctgggacagtggcagacggaatctaacggtcatcgcgtcatcttcctgtttgcagGTTAAATTTTGCCGTACCAATGGAGGTTAACCATGGTTCACCCCGATTAACAGTTAACCAGAGCACGCTAAAGTGCGCTGGTGAAGCTTTGGTCACGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - cggctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcagac