1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaatacccatctcactctgcttcttgttttgttttatttggttttttgttttttggtaaagttagggcgttaaatgtctgttttctttttctgatcacagGACACTCTCATCATAAAGCCTCCTAAGAAATCTCCAAAATTGTTAAGGATGACTGTTCTGGTGTTTGCAATGGTGTGTGGTGTTTACATCTGCTTAATCT
species | Vitis vinifera |
transcript | Vv07s0031g00880.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTTCCTTTCTGGAGTAACAATGGCAGAAGATCTCTGTTTCTTCAACAAG GACACTCTCATCATAAAGCCTCCTAAGAAATCTCCAAAATTGTTAAGGATGEST: gi|161710060|gb|FC060597.1|FC060597
genomic: TTTTCCTTTCTGGAGTAACAATGGCAGAAGATCTCTGTTTCTTCAACAAGgtacatcccc ... ctgatcacagGACACTCTCATCATAAAGCCTCCTAAGAAATCTCCAAAATTGTTAAGGATG
EST: TTTTCCTTTCTGGAGTAACAATGGCAGAAGATCTCTGTTTCTTCAACAAG GACACTCTCATCATAAAGCCTCCTAAGAAATCTCCAAAATTGTTAAGGATG
genomic: TTTTCCTTTCTGGAGTAACAATGGCAGAAGATCTCTGTTTCTTCAACAAGgtacatcccc ... ctgatcacagGACACTCTCATCATAAAGCCTCCTAAGAAATCTCCAAAATTGTTAAGGATG
ttgttttttggtaaagttagggcgttaaatgtctgttttctttttctgatcacagGACACTCTCATCATAAAGCCTCCTAAGAAATCTCCAAAATTGTTAAGGATGACTGTTCTGGTGTTTGCAATGGTGTGTGGTGTTTACATCTGCTTAATCT
ttctgat putative branch site (score: 3)
tgtctgttttcttttt CT-rich tract
ttttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatacccatctcactctgcttcttgttttgttttatttggttttttgttttttggtaaagttagggcgttaaatgtctgttttctttttctgatcacagGACACTCTCATCATAAAGCCTCCTAAGAAATCTCCAAAATTGTTAAGGATGACTGTTCTGGTGTTTGCAATGGTGTGTGGTGTTTACATCTGCTTAATCT
- - - ccatctc
- - - - - - - - ctgcttc