1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttttccttgaaaccagtttttatgaaatgtgctcccgatttggttgcttgattcctgacttgagtttgccttcttggcttatttccgttcctaattgcagGAAACAAGCATGTTTCTATGCAATTATCAAGAACTTTTTCTGGCTTAACTAATCTCCTATTCAATAGAAG
species | Vitis vinifera |
transcript | Vv07s0031g00820.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTTGTTCAGTCACAGAGGCCTCTTCATCAACTCTTTCGCTGCAATCCAG GAAACAAGCATGTTTCTATGCAATTATCAAGAACTTTTTCTGGCTTAACTAEST: gi|110711473|gb|EE087994.1|EE087994
genomic: GTTTGTTCAGTCACAGAGGCCTCTTCATCAACTCTTTCGCTGCAATCCAGgtcattttcc ... ctaattgcagGAAACAAGCATGTTTCTATGCAATTATCAAGAACTTTTTCTGGCTTAACTA
EST: GTTTGTTCAGTCACAGAGGCCTCTTCATCAACTCTTTCGCTGCAATCCAG GAAACAAGCATGTTTCTATGCAATTATCAAGAACTTTTTCTGGCTTAACTAEST: gi|34546385|gb|CF514617.1|CF514617
genomic: GTTTGTTCAGTCACAGAGGCCTCTTCATCAACTCTTTCGCTGCAATCCAGgtcattttcc ... ctaattgcagGAAACAAGCATGTTTCTATGCAATTATCAAGAACTTTTTCTGGCTTAACTA
EST: GTTTGTTCAGTCACAGAGGCCTCCTCATCAACTCTTTCGCTGCAATCCAG GAAACAAGCATGTTTCTATGCAATTATCAAGAACTTTTTCTGGCTTAACTAEST: gi|26261950|gb|CA813013.1|CA813013
genomic: GTTTGTTCAGTCACAGAGGCCTCTTCATCAACTCTTTCGCTGCAATCCAGgtcattttcc ... ctaattgcagGAAACAAGCATGTTTCTATGCAATTATCAAGAACTTTTTCTGGCTTAACTA
EST: GTTTGTTCAGTCACAGAGGCCTCTTCATCAACTCTTTCGCTGCAATCCAG GAAACAAGCATGTTTCTATGCAATTATCAAGAACTTTTTCTGGCTTAACTAEST: gi|33405428|gb|CF211055.1|CF211055
genomic: GTTTGTTCAGTCACAGAGGCCTCTTCATCAACTCTTTCGCTGCAATCCAGgtcattttcc ... ctaattgcagGAAACAAGCATGTTTCTATGCAATTATCAAGAACTTTTTCTGGCTTAACTA
EST: GTTTGTTCAGTCACAGAGGCCTCTTCATCAACTCTTTCGCTGCAATCCAG GAAACAAGCATGTTTCTATGCAATTATCAAGAACTTTTTCTGGCTTAACTA
genomic: GTTTGTTCAGTCACAGAGGCCTCTTCATCAACTCTTTCGCTGCAATCCAGgtcattttcc ... ctaattgcagGAAACAAGCATGTTTCTATGCAATTATCAAGAACTTTTTCTGGCTTAACTA
gcttgattcctgacttgagtttgccttcttggcttatttccgttcctaattgcagGAAACAAGCATGTTTCTATGCAATTATCAAGAACTTTTTCTGGCTTAACTAATCTCCTATTCAATAGAAG
tcctaat putative branch site (score: 2)
cttatttccgttcct CT-rich tract
ttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttccttgaaaccagtttttatgaaatgtgctcccgatttggttgcttgattcctgacttgagtttgccttcttggcttatttccgttcctaattgcagGAAACAAGCATGTTTCTATGCAATTATCAAGAACTTTTTCTGGCTTAACTAATCTCCTATTCAATAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- ttccttg
- - - - -aaaccag
- - - - - - - - - - - - - - -tgctccc
- - - - - - - - - - - - - - - - - - - - - - tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacttg