Sequence
atgc intronic sequence ATGC exonic sequence...gatttattaatcttccattgttgttgttcatttctattttatctgctcttaatttcagcttgttctaaaaaaataatattctatgataactttggtgcagAAATCAAAGAATGACAGAGGATCAGTCAGTAGTTGGTCGTAGGAGAATTTATTATGACCAAACTGGTGGTGAAGCTTTAATTTGCAGTGACAGTGAGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g00320.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G05760.1 (Glycine max), 3'ss of exon 3
---gatttattaatcttccattgttgttgttcatttctattttatctgctcttaatttcagcttgttctaaaaaaataatattctatgataactttggtgcagAAATCAAAGAATGACAGAGGATCAGTCAGTAGTTGGTCGTAGGAGAATTTATTATGACCAAACTGGTGGTGAAGCTTTAATTTGCAGTGACAGTGAGGAG
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atcgtagtttcaccttttcatctctatagttttcttctatattg---atgcaaaaaattggatcttttgaagatatttgctacttgtgttcattctggtacagAAATCAAAGAATGACCGAGGATCAGTCAGTTGTAGGCCGGAGACGAATTTATTATGATCAGAATGGTGGAGAAGCACTTATTTGCAGTGACAGTGAAGAG
upper sequence: Vv07s0031g00320.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G39490.1 (Glycine max), 3'ss of exon 3
---gatttattaatcttccattgttgttgttcatttctattttatctgctcttaatttcagcttgttctaaaaaaataatattctatgataactttggtgcagAAATCAAAGAATGACAGAGGATCAGTCAGTAGTTGGTCGTAGGAGAATTTATTATGACCAAACTGGTGGTGAAGCTTTAATTTGCAGTGACAGTGAGGAG
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ttcaattcatta-ttttttgtctatatagttttcttctgtatt-tatgtaaaaaaattggacctcttgaagatatttgctact-tgtgttcattctggtacagAAATCAAAGAATGACCGAGGATCAGTCAGTTGTAGGCCGGAGACGAATTTATTATGATCAGAATGGTGGAGAAGCACTGATTTGCAGTGACAGTGAAGAG
upper sequence: Vv07s0031g00320.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G23380.1 (Arabidopsis thaliana), 3'ss of exon 3
gatttattaatcttccattgttgtt-gttcatttctattttatctgctcttaatttcagcttgttctaaaaaaataatattctatgataacttt------ggtgcagAAATCAAAGAATGACAGAGGATCAGTCAGTAGTTGGTCGTAGGAGAATTTATTATGACCAAACTGGTGGTGAAGCTTTAATTTGCAGTGACAGTGAGGAG
| | || | || | ||| | | | || | | || | ||| | ||| | | | | | ||| || ||| | | |||||||||||||||||||| || || ||||| ||||| ||||| ||||||||||||||||| |||||||| || ||||| | || |||||||| ||||| |||
-gtatgttgacatt--aatgtcgcaagagtacttgaaaatattcaagttgaaatgtaagcccctcgcatagtatcttaacgttataatcactcttgaaatgatgcagAAATCAAAGAATGACTGAAGACCAGTCTGTAGTGGGTCGAAGGAGAATTTATTATGATCAAACTGGCGGGGAAGCGCTTATCTGCAGTGATAGTGAAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcttaatttcagcttgttctaaaaaaataatattctatgataactttggtgcagAAATCAAAGAATGACAGAGGATCAGTCAGTAGTTGGTCGTAGGAGAATTTATTATGACCAAACTGGTGGTGAAGCTTTAATTTGCAGTGACAGTGAGGAG
tgataac putative branch site (score: 2)
ttgttctaaaaaaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatttattaatcttccattgttgttgttcatttctattttatctgctcttaatttcagcttgttctaaaaaaataatattctatgataactttggtgcagAAATCAAAGAATGACAGAGGATCAGTCAGTAGTTGGTCGTAGGAGAATTTATTATGACCAAACTGGTGGTGAAGCTTTAATTTGCAGTGACAGTGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - -cttccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa