1 5' 3' | 2 5' 3' | 3 5' 3' |
...attttggtgcctgtacctttccttcacttcattaggtaccatacagagcttaatttcaacactgtttttaatgaatttttttggttttgttttattgtagGATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAAGGCTTATGAGGGAATCCCTCCACCATATGATAAGATGAAGAGGATGGTC
species | Vitis vinifera |
transcript | Vv07s0005g06490.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGG GATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTGGCACGATTGAAEST: gi|37188674|gb|CF608023.1|CF608023
genomic: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGGgtgagttatt ... tttattgtagGATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAA
EST: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGG GATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAAEST: gi|32456523|gb|CD797697.1|CD797697
genomic: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGGgtgagttatt ... tttattgtagGATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAA
EST: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGG GATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAAEST: gi|37185713|gb|CF605066.1|CF605066
genomic: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGGgtgagttatt ... tttattgtagGATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAA
EST: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGG GATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAAEST: gi|110384420|gb|EC948855.1|EC948855
genomic: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGGgtgagttatt ... tttattgtagGATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAA
EST: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGG GATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAAEST: gi|87584078|gb|DY473371.1|DY473371
genomic: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGGgtgagttatt ... tttattgtagGATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAA
EST: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGG GATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAAEST: gi|26262092|gb|CA813155.1|CA813155
genomic: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGGgtgagttatt ... tttattgtagGATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAA
EST: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGG GATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAAEST: gi|26262033|gb|CA813096.1|CA813096
genomic: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGGgtgagttatt ... tttattgtagGATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAA
EST: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGG GATGATTCCGCACAAGAEST: gi|37187763|gb|CF607116.1|CF607116
genomic: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGGgtgagttatt ... tttattgtagGATGATTCCGCACAAGA
EST: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGG GATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAAEST: gi|71856679|gb|DT005734.1|DT005734
genomic: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGGgtgagttatt ... tttattgtagGATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAA
EST: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGG GATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAA
genomic: CCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGGgtgagttatt ... tttattgtagGATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAA
gagcttaatttcaacactgtttttaatgaatttttttggttttgttttattgtagGATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAAGGCTTATGAGGGAATCCCTCCACCATATGATAAGATGAAGAGGATGGTC
ttttaat putative branch site (score: 3)
ttttgtttt putative PPT
tttttaatgaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttggtgcctgtacctttccttcacttcattaggtaccatacagagcttaatttcaacactgtttttaatgaatttttttggttttgttttattgtagGATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAAGGCTTATGAGGGAATCCCTCCACCATATGATAAGATGAAGAGGATGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - -tgcctgt
- - - - - - - -cctttcc
- - - - - - - - - - - - cacttca
- - - - - - - - - - - - - - - - - - - ccataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - caacact