Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atctcttgggctcatgctgcctgtcggttaaactgggttgaatttctttcattttgattttttattagtttgaactaactttatctgtttaatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCATTCCTTGAGCGAGTCAAAGAGGATTTTACCAAGAGATATGGTGGGGGAAA

Basic information

species Vitis vinifera
transcript Vv07s0005g05790.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g05790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os07g09600.1 (Oryza sativa), 3'ss of exon 1
atctcttgggctcatgctgcct-gtcggttaaactgggttgaattt-ctttcattttgattttttattagtttgaactaactttatctgtttaatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCATTCCTTGAGCGAGTCAAAGAGGATTTTACCAAGAGATATGGTGGGGGAAA
 | | |||  ||  || | | | |  | ||  |||   |   |    ||     | ||  ||   |||| ||   | |  | ||  |       ||| ||||| |||||||| |||||||||||  | |||||  | || || || ||||| ||||||||  ||||||| || ||||| ||||| ||||||||||| || ||
-tattttgatcttttggtactttgatgttttcactttctaacacaaactcatgatgtgcattgagattaattatcatttccatttccccccctttgt-gcagCATACTGTGTAGTTGCTGTTGAATCAGTTGGGCGACAAATCCCCATTGCTTTCCTTGACAGAGTCAAGGAAGATTTCACCAAAAGATATGGTGGTGGGAA

upper sequence: Vv07s0005g05790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G47040.1 (Glycine max), 3'ss of exon 1
atctcttgggctcatgctgcctgtcggttaaactgggttgaatttctttcattttgattttttattagtttgaactaactt--tatctgtttaatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCATTCCTTGAGCGAGTCAAAGAGGATTTTACCAAGAGATATGGTGGGGGAAA
  ||    |  |  |||||    |   ||    |  |||  ||    |  |||   | ||  | |||||| ||||||| |   |  ||| | ||| |||||||||||||||| ||||| |||||| ||| |||  |||||||||||||||| |||||||| ||| |||| |||||||||||||||| ||||| ||| |||||
--cttgctgctttctgctggtgatacttttgtttttgtttcatcgactgaattaataattactgttagttggaactaattaagtgcctgctgaatattgcagCTTACTGTGTGGTTGCCGTTGAGTCTGCTGGACGGCAGATTCCAATTGCTTTCCTTGAACGAATCAAGGAGGATTTTACCAAGAAATATGCTGGAGGAAA

upper sequence: Vv07s0005g05790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G38010.1 (Glycine max), 3'ss of exon 1
atctcttgggctcatgctgcctgtcggttaaactgggttgaatttctttcattttgat-----tttttattagtttgaactaact--ttatctgtttaatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCATTCCTTGAGCGAGTCAAAGAGGATTTTACCAAGAGATATGGTGGGGGAAA
           |  ||||  |||| ||| |  ||  |||   |||  || | |    |     ||  | |||||| |||||||||   |  ||| | ||| ||| |||||||||||| |||||||||||| ||| |||  |||||||||||||||| ||||| || ||| |||| ||||||||||||||||  |||| ||| |||| 
------gaatttggtgctttctgttggtgatgctttgttttgttttattgactgaagtaataattactgttagttagaactaactaagtgcctgctgaatattgtaGCTTACTGTGTGGTTGCTGTTGAGTCTGCTGGACGGCAGATTCCAATTGCTTTCCTCGAACGAATCAAGGAGGATTTTACCAAGAAGTATGCTGGAGGAA-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161710994|gb|FC060349.1|FC060349
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTATGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|351029943|gb|FQ427783.1|FQ427783
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|161720039|gb|FC068337.1|FC068337
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|37183491|gb|CF602845.1|CF602845
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|32246007|gb|CD711826.1|CD711826
EST:     AACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: AACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|351021665|gb|FQ437050.1|FQ437050
EST:     CTATAACTGCGATGGCCACGCCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|351015320|gb|FQ445604.1|FQ445604
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|110415392|gb|EC981297.1|EC981297
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|351021551|gb|FQ429655.1|FQ429655
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|351014527|gb|FQ437529.1|FQ437529
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|110721390|gb|EE098332.1|EE098332
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|30297319|gb|CB974113.1|CB974113
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATCCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|351056311|gb|FQ454172.1|FQ454172
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|349832624|gb|FQ421982.1|FQ421982
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|110430047|gb|EC996574.1|EC996574
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|351023055|gb|FQ430930.1|FQ430930
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|110412623|gb|EC978378.1|EC978378
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|352787074|gb|FQ476107.1|FQ476107
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|161715257|gb|FC065806.1|FC065806
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|351046467|gb|FQ453083.1|FQ453083
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|110425509|gb|EC991895.1|EC991895
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|161706486|gb|FC055007.1|FC055007
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|351022048|gb|FQ437835.1|FQ437835
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|27586664|gb|CB009359.1|CB009359
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|351022211|gb|FQ438796.1|FQ438796
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|352798399|gb|FQ480424.1|FQ480424
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|30126338|gb|CB911677.1|CB911677
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|110430210|gb|EC996750.1|EC996750
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|110732564|gb|EE107971.1|EE107971
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|351014074|gb|FQ434226.1|FQ434226
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|110724463|gb|EE100315.1|EE100315
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|351032040|gb|FQ460297.1|FQ460297
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|349825790|gb|FQ423085.1|FQ423085
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|110723385|gb|EE100639.1|EE100639
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|161709094|gb|FC058378.1|FC058378
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|351030686|gb|FQ438524.1|FQ438524
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|351013454|gb|FQ425485.1|FQ425485
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|351030616|gb|FQ437042.1|FQ437042
EST:     CTATAACTGCGATGGCCACGCCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|349823667|gb|FQ415077.1|FQ415077
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|110724935|gb|EE101200.1|EE101200
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|161718274|gb|FC065689.1|FC065689
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|110403237|gb|EC964615.1|EC964615
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|38516682|gb|CF983857.1|CF983857
EST:     TATAACTGCGATGGCCACACCTTCAACTACCTCGNTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: TATAACTGCGATGGCCACACCTTCAACTACCTCG-TCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
EST: gi|110694944|gb|EE072393.1|EE072393
EST:     CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATA                         CTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT
genomic: CTATAACTGCGATGGCCACACCTTCAACTACCTCGTCGAAGATGGCTATAgtacgtggtt ... aatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcattttgattttttattagtttgaactaactttatctgtttaatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCATTCCTTGAGCGAGTCAAAGAGGATTTTACCAAGAGATATGGTGGGGGAAA
     attttgattttttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atctcttgggctcatgctgcctgtcggttaaactgggttgaatttctttcattttgattttttattagtttgaactaactttatctgtttaatgttgcagCTTACTGTGTTGTTGCTGTTGAGGCTGTTGGTAGGCAGATTCCAATTGCATTCCTTGAGCGAGTCAAAGAGGATTTTACCAAGAGATATGGTGGGGGAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- ctcttgg
- - - - - ctcatgc
- - - - - - - - - -cctgtcg
- - - - - - - - - - - - - - - - - gggttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaac