Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctgttttatagttatgcattcttattcacattgaagatgtagttccttcaccatcatagtttcaggaggttcttatattactttgtgctgtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCCGTAATGAAAGTTGAGAAGGCTCCATTGGAATCATATGCTGACATAGGAG

Basic information

species Vitis vinifera
transcript Vv07s0005g05160.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os07g49150.1 (Oryza sativa), 3'ss of exon 1
----tctgttttatagttatgcattcttattcacattgaagatgtagttccttcaccatcatagtttcaggaggttcttatattactttgtgctgtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCCGTAATGAAAGTTGAGAAGGCTCCATTGGAATCATATGCTGACATAGGAG
      | | ||||  |     |      |  ||  |  |    |    |    |   | |  | |  || | | |     | ||  |    || | ||  |||||||| ||||| || ||  || | ||||| ||||||||||| ||||| || || |||||||| ||||| |||||  ||||||| ||||||||||| || |
tatcattttcttatgatcgaataagtgactcaaccgtacatccatgtggctagtaattttaatgctctagcaagcttgctcactaaatcc--ctatttc--cagGTTCTGTCTGTGGTCGGAATTTTGCAAGATGAAGTTGATCCTATGGTTTCTGTGATGAAAGTGGAGAAAGCTCCGCTGGAATCCTATGCTGACATTGGTG

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G095593_T01 (Zea mays), 3'ss of exon 1
tctgttttatagt-tatgcattcttattcacattgaagatgtagttccttcaccatcatagtttcaggaggttcttatattactttgtgctgtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCCGTAATGAAAGTTGAGAAGGCTCCATTGGAATCATATGCTGACATAGGAG
| ||||  || |   |||||||  |   |   ||  |  ||        |  | | |  || ||         || | |        || |  ||| ||||||||||||||| |||||| |  | ||||| ||||||||||| ||||| || || |||||||||||||| || || |||||||| ||||||||||| || |
tttgttgcattgcacatgcattagtggaccgtttacaactggtaggggatagcaagc-cagcttgttttctcactcaaacagtcaaatgtttactcttcagGTTCTTTCTGTAGTTGGTATATTGCAAGATGAAGTTGATCCTATGGTATCTGTGATGAAAGTTGAGAAAGCACCTTTGGAATCTTATGCTGACATTGGTG

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G056569_T01 (Zea mays), 3'ss of exon 1
tctgttttatagttatgcattcttattcacat-tgaagatgtagttccttcaccatcatagtttcaggaggttcttatattactttgtgctgtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCCGTAATGAAAGTTGAGAAGGCTCCATTGGAATCATATGCTGACATAGGAG
| || |  |||   ||   || | | |  ||        || | |   || |||||||          |  || ||   | |||      | || | ||||||||| ||||| |||||| |  | ||||| ||||||||||| ||||| || || |||||||||||||| || || |||||||| ||||||||||| || |
tgtgctcaataaccatttgttgtaaattgcacgctttagtggattgttttgaccatcaggagaggttcatcttgtttgctcactcaaatgt-tcacttcagGTTCTCTCTGTGGTTGGTATATTGCAAGATGAAGTTGATCCTATGGTATCTGTGATGAAAGTTGAGAAAGCGCCTTTGGAATCTTATGCTGACATTGGTG

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G104373_T01 (Zea mays), 3'ss of exon 1
----tctgtttta-tagttatgcattcttattcacattgaagatgtagttccttcaccatcatagtt--tcaggaggttcttatattactttgtgctgtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCCGTAATGAAAGTTGAGAAGGCTCCATTGGAATCATATGCTGACATAGGAG
    ||  |  |  |  | | |   | |  |     ||  |  |||| |||||| |     ||  ||  | || |      |   |  |    || |  |   | ||||||| || || |||||| || | ||||||||||||||||| ||||| || || ||||||||||| ||||| || ||||| || ||||||||||| || |
aaaatcaatgctgctcctcaagtgatgtactctgtgtttta--tgtacttccttgatttgaatgcttatttagtaaacagct---tggccaaatgtttccc--ttagGTTCTGTCAGTGGTTGGTATTTTGCAAGACGAAGTTGATCCTATGGTTTCTGTGATGAAAGTTGAAAAGGCACCTTTGGAGTCTTATGCTGACATTGGTG

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G19280.1 (Glycine max), 3'ss of exon 1
tctgttttatagttatgcattcttattcacattgaagatgtagttccttcaccatcatagtttcaggaggttct-tatattactttgtgctgtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCCGTAATGAAAGTTGAGAAGGCTCCATTGGAATCATATGCTGACATAGGAG
| |  || | |   ||  ||      ||  |||  | ||     |  ||||     ||||   | |  | | |  |   |||  |  |  | | |  ||||||||||||||||||||| ||||| ||||| ||||||||||||||||| || || ||||| ||||||||||||||  ||||||| ||||||||||| || |
tattcttcagaaccata-atatgatctcgaatttgacataattgttgttcatgtggatagaagctgacgatgcaatgatttatgtattttttttttatcagGTTCTTTCTGTTGTTGGGCTTCTTCAAGATGAAGTTGATCCAATGGTCTCTGTCATGAAGGTTGAGAAGGCTCCTCTGGAATCTTATGCTGACATTGGTG

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G35510.1 (Glycine max), 3'ss of exon 1
--------tctgttttatagttatgcattcttattcacattgaagatgtagttccttcaccatcatagtttcaggaggttcttatattactttgtgctgtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCCGTAATGAAAGTTGAGAAGGCTCCATTGGAATCATATGCTGACATAGGAG
        | ||| |||   | |  |||   | ||      |  ||| |  ||   |  |    |  ||       | |||||||  |   | || ||   |  ||||||||| ||||||||||| ||||| ||||| ||||||||||||||||| || || ||||| ||||| ||||| || ||||||||||||||||| || || |
taattgtttttgtattaagatcagtcatctctttttgtgcagttgatatgattagat-gctggaaatgt----aatgcttcttatcatgtatggttct---ttatcagGTTCTCTCTGTTGTTGGGCTTCTTCAAGATGAAGTTGATCCAATGGTCTCTGTTATGAAGGTTGAAAAGGCACCTTTGGAATCATATGCTGATATTGGTG

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G04920.1 (Glycine max), 3'ss of exon 1
tctgttttatagttat-gcattcttattcacattgaagatgtagttccttcaccatcatagtttcaggaggttcttatattacttt------gtgctgtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCCGTAATGAAAGTTGAGAAGGCTCCATTGGAATCATATGCTGACATAGGAG
        ||| || | |  |||||| |   ||||   || || |    |      | | |||  | |  |  | |||| |  ||       ||  | | |  ||||||||||||||||||||| ||||| ||||| ||||||||||||||||| || || ||||| || ||||| |||||  ||||||| ||||||||||| || |
-------cataattgttgttttcttaattgaattggtcatatattggtgtggttcacgtggttagatgctggccatataatgtttatgtatggtttttttttatcagGTTCTTTCTGTTGTTGGGCTTCTTCAAGATGAAGTTGATCCAATGGTCTCTGTTATGAAGGTCGAGAAAGCTCCTCTGGAATCTTATGCTGACATTGGTG

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G32800.1 (Glycine max), 3'ss of exon 1
-tctgttttatagtt--atgcattcttattcacattgaagatgtagttccttcaccatcatagtttcaggaggttcttatattactttgtgctgtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCCGTAATGAAAGTTGAGAAGGCTCCATTGGAATCATATGCTGACATAGGAG
 |   |||| || ||  ||   || | | |     ||   |  |  |    | |    ||     |     | |||| ||  |   |||| ||   |    ||||||| ||||||||||| ||||| ||||| ||||||||||||||||| || || ||||| || || ||||| || ||||||||||||||||| || || |
attgtttttgtatttgaatcagttgtcacttcttgtgttcagttgatatgattagatgcaggaaatgtaatgcttctcattatgtcttgttct---ttactagGTTCTCTCTGTTGTTGGGCTTCTTCAAGATGAAGTTGATCCAATGGTCTCTGTTATGAAGGTCGAAAAGGCCCCTTTGGAATCATATGCTGATATTGGTG

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G27200.1 (Glycine max), 3'ss of exon 1
-----tctgttttatagttatgcattcttattcaca--ttgaagatgtagttccttcaccatcatagtttcaggaggttcttatattactttgtgctgtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCA---ATGGTGTCCGTAATGAAAGTTGAGAAGGCTCCATTGGAATCATATGCTGACATAGGAG
       || ||| | |||||| ||  || ||| ||  ||   | | | |||  ||||   | ||  ||     ||  | |  ||| || |  || |   |  ||||||||| ||||||||||| ||||| ||||| ||||||||||||   ||||| || || ||||| ||||| ||||| || ||||||||||||| ||| || |   
ttatgaatgattt-tggttatggatgatttttctcaacttctcgtttttgttatttcaatcttattatt-----agtctttcttatcacat-atggttctttatcagGTTCTCTCTGTTGTTGGGCTTCTTCAAGATGAAGTTGATCCATTAATGGTCTCTGTTATGAAGGTTGAAAAGGCACCTTTGGAATCATATGTTGATATTG---

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G29040.1 (Arabidopsis thaliana), 3'ss of exon 1
-tctgt---tttatagttatgcattcttattcacattgaagatgtagttccttcaccatcatagtttcaggaggttcttatattactttgtgctgtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCCGTAATGAAAGTTGAGAAGGCTCCATTGGAATCATATGCTGACATAGGAG
 | |||    |||  |||    | |||| ||    |||    |    ||   |     |  | | || |||  |||  |   ||  ||| || |        ||||||| |||||||||||  |||| ||||| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||| || ||||
gtatgtgaaattagggtttaagaatcttgtttttgttgtgattacgattgtgt-gttgttgtggatttagg--gttgctgatttgttttatgtt--------agGTTCTCTCTGTTGTTGGGATTCTACAAGATGAAGTGGATCCAATGGTGTCTGTGATGAAAGTTGAGAAAGCTCCTTTGGAGTCATATGCTGATATTGGAG

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G20140.1 (Arabidopsis thaliana), 3'ss of exon 1
tctgttttatagttatgcattcttattcacattgaagatgtagttccttcaccatcatagtttcaggaggttcttatattactttgtgctgtctc---gtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCCGTAATGAAAGTTGAGAAGGCTCCATTGGAATCATATGCTGACATAGGAG
                       |||| |  || |  |||   |||| |    | | | |   ||     |   | |  || ||| |  | | |    |  |||| || |||||||||||  |||| ||||| ||||| |||||||||||||| || |||||||| ||||||||||| ||||| |||||||||||||| ||||
----------------------gtattgagttttacaatgctcttccatggaaa-cgttgaaccaattcttctatgtgatattttttattatttttgtgatagGTACTCTCTGTTGTTGGGATTCTTCAAGATGAAGTGGATCCAATGGTGTCTGTGATGAAAGTGGAGAAGGCTCCTTTGGAGTCATATGCTGACATTGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110728282|gb|EE103712.1|EE103712
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|161720494|gb|FC070606.1|FC070606
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|110370827|gb|EC934375.1|EC934375
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|110713467|gb|EE089413.1|EE089413
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|161719775|gb|FC066096.1|FC066096
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|110700045|gb|EE077633.1|EE077633
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|352764872|gb|FQ471932.1|FQ471932
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|71880466|gb|DT029521.1|DT029521
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|110356778|gb|EC919853.1|EC919853
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|37184017|gb|CF603371.1|CF603371
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCC
EST: gi|294965348|gb|GW837063.1|GW837063
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|351013394|gb|FQ425425.1|FQ425425
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|110686088|gb|EE063379.1|EE063379
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|26264508|gb|CA815571.1|CA815571
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|351017955|gb|FQ439121.1|FQ439121
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|71861429|gb|DT010484.1|DT010484
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|71880867|gb|DT029922.1|DT029922
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|161714191|gb|FC062936.1|FC062936
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCTATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|71861598|gb|DT010653.1|DT010653
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|30297307|gb|CB974101.1|CB974101
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|351012992|gb|FQ433719.1|FQ433719
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGATGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|349827953|gb|FQ422821.1|FQ422821
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTTCTCCAAGACGAAGTTGATCCAATGGTGTC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTT-CTCCAAGACGAAGTTGATCCAATGGTGTC
EST: gi|110390976|gb|EC955926.1|EC955926
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|161715101|gb|FC063972.1|FC063972
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
EST: gi|71864574|gb|DT013629.1|DT013629
EST:     TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAG                         GTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC
genomic: TTGATAAGGATCAGCTCGAGCCTGGTTGCGCCATTCTTATGCACAATAAGgtatggggat ... gtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttcaccatcatagtttcaggaggttcttatattactttgtgctgtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCCGTAATGAAAGTTGAGAAGGCTCCATTGGAATCATATGCTGACATAGGAG
                                           ctgtctc  CT-rich tract
                         ttcttatattacttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctgttttatagttatgcattcttattcacattgaagatgtagttccttcaccatcatagtttcaggaggttcttatattactttgtgctgtctcgtcagGTTCTTTCTGTTGTTGGTCTTCTCCAAGACGAAGTTGATCCAATGGTGTCCGTAATGAAAGTTGAGAAGGCTCCATTGGAATCATATGCTGACATAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - gcattct
- - - - - - - - - - - -tattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgtgc