1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttactttcacaccactatgatgtatttgtggcggattttgcttttaattttgtttgactttgagaatttgaaatggggtatttgaatttatcttacgaagGTATTCTTCTGAGGTCAAATCTTTGTTCAAGCGACTTGGTGTAGAACCTTTTGTGATTGAATTGGACGAGATGG
species | Vitis vinifera |
transcript | Vv07s0005g04860.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGACAGTGGATGAGAACCCAGTTGTTGTCTACTCCAAAACCTGGTGTTC GTATTCTTCTGAGGTCAAATCTTTGTTCAAGCGACTTGGTGTAGAACCTTTEST: gi|46910003|gb|CN545378.1|CN545378
genomic: AAGACAGTGGATGAGAACCCAGTTGTTGTCTACTCCAAAACCTGGTGTTCgtgagttcaa ... tcttacgaagGTATTCTTCTGAGGTCAAATCTTTGTTCAAGCGACTTGGTGTAGAACCTTT
EST: AAGACAGTGGAGGAGAACCCAGTAGTTGTCTACTCCAAAACCTGGTGTTC GTATTCTTCTGAGGTCAAATCTTTGTTCAAGCGACTTGGTGTAGAACCTTTEST: gi|51050807|gb|CO818738.1|CO818738
genomic: AAGACAGTGGATGAGAACCCAGTTGTTGTCTACTCCAAAACCTGGTGTTCgtgagttcaa ... tcttacgaagGTATTCTTCTGAGGTCAAATCTTTGTTCAAGCGACTTGGTGTAGAACCTTT
EST: AAGACAGTGGAGGAGAACCCAGTAGTTGTCTACTCCAAAACCTGGTGTTC GTATTCTTCTGAGGTCAAATCTTTGTTCAAGCGACTTGGTGTAGAACCTTT
genomic: AAGACAGTGGATGAGAACCCAGTTGTTGTCTACTCCAAAACCTGGTGTTCgtgagttcaa ... tcttacgaagGTATTCTTCTGAGGTCAAATCTTTGTTCAAGCGACTTGGTGTAGAACCTTT
aattttgtttgactttgagaatttgaaatggggtatttgaatttatcttacgaagGTATTCTTCTGAGGTCAAATCTTTGTTCAAGCGACTTGGTGTAGAACCTTTTGTGATTGAATTGGACGAGATGG
atcttac putative branch site (score: 3)
tttatctt CT-rich tract
tatttgaatttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttactttcacaccactatgatgtatttgtggcggattttgcttttaattttgtttgactttgagaatttgaaatggggtatttgaatttatcttacgaagGTATTCTTCTGAGGTCAAATCTTTGTTCAAGCGACTTGGTGTAGAACCTTTTGTGATTGAATTGGACGAGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - -cacacca