Sequence
atgc intronic sequence ATGC exonic sequence...atctaatgtcaggtcaagttatgtcaaggatatttgtttcctgaaagtcaaatttataggattctatagagataagataggccattttacttgtaagcagGCGAAATATACTGGAAAAGAAGTTGGCTGATGCTGACGTCTCCGAGGAAGATCAGAATAACCTGCTAAAACACTTGGAGAAGAAGGAAACTGAATACATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G32160.1 (Glycine max), 3'ss of exon 1
-------------------------atctaatgtcaggtcaag-ttatgtcaaggatatttgttt---cctgaaagtcaaattta--taggattctat-------agagataagataggccatttta----cttgta---agcagGCGAAATATACTGGAAAAGAAGTTGGCTGATGCTGACGTCTCCGAGGAAGATCAGAATAACCTGCTAAAACACTTGGAGAAGAAGGAAACTGAATACATG
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gtatgttactttaattgttaatacaatttaacatagtgttaaaactataaaaaaaaatagtgtttatgcttgaatattaatttaaattacaattgtttgattggcaaatatgtcatagaactttctaatacctcacatataatagTCGAACCATCTTGGAAAAGAAGTTGGCTGACGCTGATGTCTCCGAGGAAGATCAAAATAACCTACTTAAATTTTTAGAGAAAAAAGAAACTGAATATATG
upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G34920.1 (Glycine max), 3'ss of exon 1
-------------------------atctaatg--tcaggtcaagttatgtcaaggatatttgtttcctga----aagtcaaatttataggat----tctatagagataagataggccatttta----cttgta---agcagGCGAAATATACTGGAAAAGAAGTTGGCTGATGCTGACGTCTCCGAGGAAGATCAGAATAACCTGCTAAAACACTTGGAGAAGAAGGAAACTGAATACATG
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gtatgttactttaattgctaataaattttaacgtattgtgttaaactataaaaatgatatttatgcttgaataataatttaaatttaaattatttgatttataaatatgttgtagaactttctaataccttgcatataatagTCGAACCATCTTGGAAAAGAAGTTGGCTGACGCTGATGTCTCTGAGGAAGATCAAAATAACCTACTTAAATTTTTAGAGAAAAAGGAAACTGAATATATG
upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G18670.2 (Glycine max), 3'ss of exon 1
atctaatgtcaggtcaagttatgtcaaggata-tttgtttcctgaaagtcaaatttataggattctatagagataagataggccatt--ttacttgtaagcagGCGAAATATACTGGAAAAGAAGTTGGCTGATGCTGACGTCTCCGAGGAAGATCAGAATAACCTGCTAAAACACTTGGAGAAGAAGGAAACTGAATACATG
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attggaagtggcatct--ttgcttgaatgttaatgtgtactgtgttagttactttggcaaacatgtaataaacttttataacacctcacttgcttataa-cagTCGAACCATCTTGGAAAAGAAGTTGGCTGATGCTGATGTCTCTGAGGAGGATCAAAACAACCTGCTTAAATTTTTAGAGAAAAAGGAAACTGAATATATG
upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G04410.2 (Glycine max), 3'ss of exon 2
atctaatgtcaggtcaagttatgtcaaggatatt-tgtttcctgaaagtcaaatttataggattctatagagataagataggccattttacttgtaagcagGCGAAATATACTGGAAAAGAAGTTGGCTGATGCTGACGTCTCCGAGGAAGATCAGAATAACCTGCTAAAACACTTGGAGAAGAAGGAAACTGAATACATG-------------------
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-------------------tgcttcaatgttaatgtgtactgtgttagctgttttggcaaatatgtgataaacttttataacatcacttgcttataa-cagtcgaaccatcttggaaaagAAGTTGGCTGATGCTGATGTCTCTGAGGAGGATCAAAACAACCTGCTTAAGTTTTTAGAGAAAAAGGAAACAGAATATATGCGCCTTCAGAGGCATAAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtcaaatttataggattctatagagataagataggccattttacttgtaagcagGCGAAATATACTGGAAAAGAAGTTGGCTGATGCTGACGTCTCCGAGGAAGATCAGAATAACCTGCTAAAACACTTGGAGAAGAAGGAAACTGAATACATG
ttttactt CT-rich tract
aatttata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atctaatgtcaggtcaagttatgtcaaggatatttgtttcctgaaagtcaaatttataggattctatagagataagataggccattttacttgtaagcagGCGAAATATACTGGAAAAGAAGTTGGCTGATGCTGACGTCTCCGAGGAAGATCAGAATAACCTGCTAAAACACTTGGAGAAGAAGGAAACTGAATACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - -caggtca
- - - - - - - - - - - - - - - - - - -ttcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atagaga