Sequence
atgc intronic sequence ATGC exonic sequence...ctaatttgtcattattctgctactagtatgataatttggacaattgaatttgttggaagttggagattactcctgacaactgatcaactttgttatgcagGGTGATGTGGAGTCAATTGCATCTAAAAATCCCAAAGAACTTACAGGACTTCTTGAGCAGATCTCTGGGTCTGAGGATCTCAAGAAAGATTATGAGGATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g03450.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os12g44390.1 (Oryza sativa), 3'ss of exon 1
ctaatttgtcattattctgctactagtatgataatttggacaattgaatttgttggaagttggagattactcctgacaactgatcaactttgttatgcagGGTGATGTGGAGTCAATTGCATCTAAAAATCCCAAAGAACTTACAGGACTTCTTGAGCAGATCTCTGGGTCTGAGGATCTCAAGAAAGATTATGAGGATC
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gtcagatgtccctaatttaacattttcctcatacaactcctccctgattaattatatagcactaaataaattt--atgaattacca--tttgcaccgcagGGTGATGTGGAATCCATTGCCTCCAAGAATCCCAAGGAGCTCACCGCACTTCTGGAGCAGATCTCTGGCTCTGACGAGCTCAGGAGAGAATATGACGAGC
upper sequence: Vv07s0005g03450.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G04300.1 (Glycine max), 3'ss of exon 1
------ctaatttgtcattattctgctactagtatgataatttggacaattgaatttgttggaagttggagattactcctgacaactgatcaactttgttatgcagGGTGATGTGGAGTCAATTGCATCTAAAAATCCCAAAGAACTTACAGGACTTCTTGAGCAGATCTCTGGGTCTGAGGATCTCAAGAAAGATTATGAGGATC
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aagtgtctatgcttcctagattttaaactctgaactgaagtttatccaaacatgttttatatctgttacaggtctcaattgacaat------gctaaattgtgcagGGTGATGTGGAGTCTATTGCATCGAAGAATCCCAAAGAGCTCACTGCACTGGTGGAGCAGATATCCGGCTCTGATGAGTGCAAGAGGGACTATGAGCAGT
upper sequence: Vv07s0005g03450.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G18470.1 (Glycine max), 3'ss of exon 1
------ctaatttgtcattattctgctactagtatgataatttggacaattgaatttgttggaagttggagattactcctgacaactgatcaactttgttatgcagGGTGATGTGGAGTCAATTGCATCTAAAAATCCCAAAGAACTTACAGGACTTCTTGAGCAGATCTCTGGGTCTGAGGATCTCAAGAAAGATTATGAGGATC
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ctggcactaaagcaatgctattttagactctgaactgaagtttatccaagcatggcctatatctgttacaggtgtcaattgacaa-tggtaaa-----ttgtgcagGGTGATGTGGAGTCTATTGCGTCGAAGAATCCCAAAGAGCTCACTGCACTGGTGGAACAGATATCCGGCTCTGACGAGTGCAAGAGGGACTATGAGCAGT
upper sequence: Vv07s0005g03450.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G54670.3 (Arabidopsis thaliana), 3'ss of exon 1
----ctaatttgtcattattctgctactagtatgataatttggacaattgaatttgttggaagttggagattactcctgacaactgatcaactttgttatgcagGGTGATGTGGAGTCAATTGCATCTAAAAATCCCAAAGAACTTACAGGACTTCTTGAGCAGATCTCTGGGTCTGAGGATCTCAAGAAAGATTATGAGGATC
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gttgttgcttcgatttaattctatttttgtattgtttctatgaacgattctgtttgtttgatgt-gaatttcgtgtttaattgttc-tggattgcaaaatgtagGGTGATGTTGAATCTATTGCTTCGAAGAATCCAAAAGAACTTACTGGACTCCTCGAGGAGATTTCTGGTTCCGAGGAGCTTAAGAAAGAGTATGAAGGAC
upper sequence: Vv07s0005g03450.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ08625 (Selaginella moellendorffii), 3'ss of exon 1
ctaatttgtcattattctgctactagtatgataatttggacaattgaatttgttggaagttggagattactcctgacaactgatcaactttgttatg-cagGGTGATGTGGAGTCAATTGCATCTAAAAATCCCAAAGAACTTACAGGACTTCTTGAGCAGATCTCTGGGTCTGAGGATCTCAAGAAAGATTATGAGGATC
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-------------------------------------------gtgagtccaccgctctaagaatcgttcttttcttaactgg---gtcttgttctgacagGGTGATGTGGAATCCATCGCTTCTAAAAATCCCAAGGAACTTACGTCTCTCTTCGAGCAAATCTCTGGCTCGGAGGAGCTCAAGAAAGACTACGAAGAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaatttgttggaagttggagattactcctgacaactgatcaactttgttatgcagGGTGATGTGGAGTCAATTGCATCTAAAAATCCCAAAGAACTTACAGGACTTCTTGAGCAGATCTCTGGGTCTGAGGATCTCAAGAAAGATTATGAGGATC
ctttgtt CT-rich tract
tttgttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctaatttgtcattattctgctactagtatgataatttggacaattgaatttgttggaagttggagattactcctgacaactgatcaactttgttatgcagGGTGATGTGGAGTCAATTGCATCTAAAAATCCCAAAGAACTTACAGGACTTCTTGAGCAGATCTCTGGGTCTGAGGATCTCAAGAAAGATTATGAGGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - ctgctac
- - - - - - - - - - - - - - - - - - - - -aattgaa
- - - - - - - - - - - - - - - - - - - - - - - - -ttgttgg