1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatgataagatgtttatttacaaaatcaaactgatattttctgggtgtgttctttgttatgaattacaattaaaactcccttggtggcatatttttgcagGTTGTTGCTCTGAAATCAGTCTCTCAGCTCAAGTTTAACACTAAGATTCTTCAG
species | Vitis vinifera |
transcript | Vv07s0005g02820.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGCGACGATTCTTCTACTTTTGGGGGCCATCTCCACGTTTCACCCGGAG GTTGTTGCTCTGAAATCAGTCTCTCAGCTCAAGTTTAACACTAAGATTCTTEST: gi|161707045|gb|FC055922.1|FC055922
genomic: TGGCGACGATTCTTCTACTTTTGGGGGCCATCTCCACGTTTCACCCGGAGgtgctttgtt ... atttttgcagGTTGTTGCTCTGAAATCAGTCTCTCAGCTCAAGTTTAACACTAAGATTCTT
EST: TGGCGACGATTCTTCTACTTTTGGGGGCC-TCTCCACGTTTCACCCGGAG GTTGTTGCTCTGAAATCAGTCTCTCAGCTCAAGTTTAACACTAAGATTCTTEST: gi|161710063|gb|FC058095.1|FC058095
genomic: TGGCGACGATTCTTCTACTTTTGGGGGCCATCTCCACGTTTCACCCGGAGgtgctttgtt ... atttttgcagGTTGTTGCTCTGAAATCAGTCTCTCAGCTCAAGTTTAACACTAAGATTCTT
EST: TGGCGACGATTCTGCTACTTTTGGGGGCCATCTCCACGTTTCACCCGGAG GTTGTTGCTCTGAAATCAGTCTCTCAGCTCAAGTTTAACACTAAGATTCTTEST: gi|161706544|gb|FC055833.1|FC055833
genomic: TGGCGACGATTCTTCTACTTTTGGGGGCCATCTCCACGTTTCACCCGGAGgtgctttgtt ... atttttgcagGTTGTTGCTCTGAAATCAGTCTCTCAGCTCAAGTTTAACACTAAGATTCTT
EST: TGGCGACGATTCTTCTACTTTTGGGGGCCATCTCCACGTTTCACCCGGAG GTTGTTGCTCTGAAATCAGTCTCTCAGCTCAAGTTTAACACTAAGATTCTTEST: gi|161708339|gb|FC055288.1|FC055288
genomic: TGGCGACGATTCTTCTACTTTTGGGGGCCATCTCCACGTTTCACCCGGAGgtgctttgtt ... atttttgcagGTTGTTGCTCTGAAATCAGTCTCTCAGCTCAAGTTTAACACTAAGATTCTT
EST: TGGCGACGATTCTTCTACTTTTGGGGGCCATCTCCACGTTTCACCCGGAG GTTGTTGCTCTGAAATCAGTCTCTCAGCTCAAGTTTAACACTAAGATTCTT
genomic: TGGCGACGATTCTTCTACTTTTGGGGGCCATCTCCACGTTTCACCCGGAGgtgctttgtt ... atttttgcagGTTGTTGCTCTGAAATCAGTCTCTCAGCTCAAGTTTAACACTAAGATTCTT
tgtgttctttgttatgaattacaattaaaactcccttggtggcatatttttgcagGTTGTTGCTCTGAAATCAGTCTCTCAGCTCAAGTTTAACACTAAGATTCTTCAG
tattttt CT-rich tract
tttgttatgaattaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgataagatgtttatttacaaaatcaaactgatattttctgggtgtgttctttgttatgaattacaattaaaactcccttggtggcatatttttgcagGTTGTTGCTCTGAAATCAGTCTCTCAGCTCAAGTTTAACACTAAGATTCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- -gataaga
- - - - - - - - - - - aaatcaa
- - - - - - - - - - - - - - - - - - - - - gggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctt