Sequence
atgc intronic sequence ATGC exonic sequence...ttgaggagaaattcagaaaggatacaaggatgtttgatttgcttgttcatggcttttttcttttctttttttcttttttgtttgcatttatggggtacagGTTGAAGCCCAAGAAGACAACAAGTCAAAAGAGGCAGAGAGAACCGAGATTCGCCTTCATGACAAAGAGCGAGGTTGATCATCTGGAAGATGGGTACAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g01710.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G01450.1 (Glycine max), 3'ss of exon 1
ttgaggagaaattcagaaaggatacaaggatgtttgatttgcttgttcatggcttttttcttttctttttttcttttttg---tttgcatttatggggtacagGTTGAAGCCCAAGAAGACAACAAGTCAAAAGAGGCAGAGAGAACCGAGATTCGCCTTCATGACAAAGAGCGAGGTTGATCATCTGGAAGATGGGTACAGA---
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---gataaaataacaatgaatatatacatacatgtggtgtggttgatgtgaggaaggttctaagatttgatggtttctgggatctggttcttattgggtttagGTTGAAGCCCAAGAAGACAA---ATCAGAAGAGACAGAGAGAACCAAGATTCGCGTTCATGACGAAAAGCGAGGTCGATCATCTGGAAGATGGGTACAGATGG
upper sequence: Vv07s0005g01710.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G40560.1 (Glycine max), 3'ss of exon 1
ttgaggagaaattcagaaaggatacaaggatgtttgatttgcttgttcatggctttt--ttcttttctttttttcttttttgtttgcatttatggggt--acagGTTGAAGCCCAAGAAGACAACAAGTCAAAAGAGGCAGAGAGAACCGAGATTCGCCTTCATGACAAAGAGCGAGGTTGATCATCTGGAAGATGGGTACAGA---
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----aatggtacgttaattgaattatttaatgctcggaagattttctaatgagatttgatgattttttttttctgggatgtggttgatgttgttgggtaaatagGTTGAAGGCAAAGAAGACAA---ATCAGAAGAGACAGAGAGAACCGAGATTCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGG
upper sequence: Vv07s0005g01710.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G37940.1 (Glycine max), 3'ss of exon 1
-ttgaggagaaattca--gaaaggatacaaggatgtttgatttgcttgttcatggcttttttcttttctttttttcttttttgtttgcatttatggggta--cagGTTGAAGCCCAAGAAGACAACAAGTCAAAAGAGGCAGAGAGAACCGAGATTCGCCTTCATGACAAAGAGCGAGGTTGATCATCTGGAAGATGGGTACAGA---
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atggtacgttaattgatttatttaatgttaggaagattctaatgagatttgatgggtttatattttt-----tctgggatgtggttgatgttgttgggtaattagGTTGAAGGCTAAGAAGACAA---ATCAGAAGAGACAGAGAGAACCGAGATTCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGATACAGATGG
upper sequence: Vv07s0005g01710.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G01420.1 (Glycine max), 3'ss of exon 1
---ttgaggagaaattcagaaaggatacaaggatgtttgatttgcttgttcatggcttttttcttttctttttttcttttttgtttgcatttatggggtacagGTTGAAGCCCAAGAAGACAACAAGTCAAAAGAGGCAGAGAGAACCGAGATTCGCCTTCATGACAAAGAGCGAGGTTGATCATCTGGAAGATGGGTACAGA---
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ccttttgaaataaaataacaatgaatacatgtg-atgtggttgatgtgaggaaggttctaagatttgatggtttctgggatc--tggttcttattgggtttagGTTGAAGCCTAAGAAGACAA---ATCAGAAGAGACAGAGAGAACCAAGATTCGCATTCATGACGAAAAGCGAGGTCGATCATCTGGAAGATGGATACAGATGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcatggcttttttcttttctttttttcttttttgtttgcatttatggggtacagGTTGAAGCCCAAGAAGACAACAAGTCAAAAGAGGCAGAGAGAACCGAGATTCGCCTTCATGACAAAGAGCGAGGTTGATCATCTGGAAGATGGGTACAGA
cttttttcttttcttt CT-rich tract
ttttttcttttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgaggagaaattcagaaaggatacaaggatgtttgatttgcttgttcatggcttttttcttttctttttttcttttttgtttgcatttatggggtacagGTTGAAGCCCAAGAAGACAACAAGTCAAAAGAGGCAGAGAGAACCGAGATTCGCCTTCATGACAAAGAGCGAGGTTGATCATCTGGAAGATGGGTACAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - ggagaaa
- - - - - - -cagaaag
- - - - - - - - - - gatacaa