Sequence
atgc intronic sequence ATGC exonic sequence...caacctcctactgaactcttaagaaattaaatctgtattatctaaattttaccacgtcccaatctgatattaacattgcatttatatctcattctgccagATTGTTGTGAACCAGACATGGTGCTGAAACAGGGGAGCCATGGTTGCCATTGTGTGTATCCTATAAAGGTCGACCTTGTCCTTTTGAATGTCTCACAGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g01590.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G37910.1 (Glycine max), 3'ss of exon 2
caacctcctactgaactcttaagaaattaaatctgtattatctaaattttaccacgt-------cccaatctgatattaacattgcatttatatctcattctgccagATTGTTGTGAACCAGACATGGTGCTGAAACAGGGGAGCCATGGTTGCCATTGTGTGTATCCTATAAAGGTCGACCTTGTCCTTTTGAATGTCTCACAGAA
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-----ttttgctgttgttataa-acattacat-tatatttcatgatttttgtgagctttggaacctgaaactgatactgacacggttgcttatttttattctggcagATTGTTGTAAACAAGACATGGTGCTGAAAAGGGGTAGTAAGGATTGCCACTGTGCATATCCCATAAAGCTAGACCTTTTTCTTTCGAATGTCTCTCAAAA
upper sequence: Vv07s0005g01590.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G40500.1 (Glycine max), 3'ss of exon 1
-----------------------------------------------------------------------------------------------caacctcctactgaactcttaagaaattaaatctgtattatctaaattttacca-cgtcccaatctgatattaacattg---cattta--tatctcattctgccagATTGTTGTGAACCAGACATGGTGCTGAAACAGGGGAGCCATGGTTGCCATTGTGTGTATCCTATAAAGGTCGACCTTGTCCTTTTGAATGTCTCACAGAA
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gtaagtcatcactttttttccccttatagaaaatctagcatgtccttaaatagcaaattatcttgaatataaacattaaaatatatttagtgggataaggctttgttgttgttataa-acattacat-tatatttcatgatttttgtgagctttggaacctgaaatcaatactgacacggttgcttatttttatttgccagATTGTTGTAAACAAGACATGGTGCTGAAAAGGGGCAGTAAGGATTGCCAATGTGCATATCCCATAAAGCTAGACCTTTTTCTTTCAAATGTCTCTCAAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attttaccacgtcccaatctgatattaacattgcatttatatctcattctgccagATTGTTGTGAACCAGACATGGTGCTGAAACAGGGGAGCCATGGTTGCCATTGTGTGTATCCTATAAAGGTCGACCTTGTCCTTTTGAATGTCTCACAGAA
tattaac putative branch site (score: 1)
tctcattct putative PPT
atattaacattgcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caacctcctactgaactcttaagaaattaaatctgtattatctaaattttaccacgtcccaatctgatattaacattgcatttatatctcattctgccagATTGTTGTGAACCAGACATGGTGCTGAAACAGGGGAGCCATGGTTGCCATTGTGTGTATCCTATAAAGGTCGACCTTGTCCTTTTGAATGTCTCACAGAA
- -cctccta
- - - - - - - - - - - -aaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattgca