Sequence
atgc intronic sequence ATGC exonic sequence...gaaggtaggggtccagcagtgagcttggtatccttgttgcttacctgtagttttctataatcttcttatataataatatttgcttcatttgtatgtgaagGCACAAAAATCAAATTTGGAAGGACTTCTTCAAAGACATGTTGAAATGGCAGCTGAGATAAAAAATCTTGACACTGACTTGCAGATGTTAGTGTATGAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g01440.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G01660.1 (Glycine max), 3'ss of exon 1
-------------gaaggtaggggtccagcagtgag-cttggtatccttgttgcttacctgtagttt----tctataatcttcttatataataatatttgcttcatttgtatgtgaagGCACAAAAATCAAATTTGGAAGGACTTCTTCAAAGACATGTTGAAATGGCAGCTGAGATAAAAAATCTTGACACTGACTTGCAGATGTTAGTGTATGAAA
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gtaaattcttcttccccttctccctcaattagtcactctcgtcgaagtcgaagacgaacttgaatttggagcacgaaacctcacttgattttattaaatgaatgaatgaattatgcagGCACACAAGTCCAATTTGGAAGGCCTGCTCCAACGCCACGTTGAAATGGCAGCTGAAATCAAGAATCTCGACACCGACTTGCAAATGCTGGTTTACGAGA
upper sequence: Vv07s0005g01440.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G01610.1 (Glycine max), 3'ss of exon 1
-------------gaaggtaggggtccagcagtgag-cttggtatccttgttg-cttacctgtagttttctataatcttcttatataataatatttgcttcatttgtatgtgaagGCACAAAAATCAAATTTGGAAGGACTTCTTCAAAGACATGTTGAAATGGCAGCTGAGATAAAAAATCTTGACACTGACTTGCAGATGTTAGTGTATGAAA
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gtgaattcttcttcccctcctctctcaattaatcactctcgtcgttttcgtcgtcgtcgtcgtcgtcgaagatgaacttcaatttggagcatgaatgaatgaatgaattatgcagGCACACAAGTCCAATTTGGAAGGCCTTCTACAACGCCACGTTGCAATGGCTGCTGAAATCAAGAATCTCGACACCGACTTGCAAATGCTAGTTTACGAGA
upper sequence: Vv07s0005g01440.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G02030.1 (Arabidopsis thaliana), 3'ss of exon 1
-----gaaggtaggggtccagcagtgagcttggtatccttgttgcttacctgtagttttctataatcttcttatataataatatttgcttcatttgtatgtgaagGCACAAAAATCAAATTTGGAAGGACTTCTTCAAAGACATGTTGAAATGGCAGCTGAGATAAAAAATCTTGACACTGACTTGCAGATGTTAGTGTATGAAA
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aaattgggtttatgaggtttgtgttaagtgtggtgacagtagtgctagcgatctgattgagata----tatgccacagtc-tggtgattttattggcttgtgcagATCAAAAAGTCGAATTTGGAGGTGCTTCTGCAAAGACATGTTCAAATGGCTGCTGAGATTAAAAATCTCGACACAGACTTGCAAATGCTAGTCTATGAAA
upper sequence: Vv07s0005g01440.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G02030.2 (Arabidopsis thaliana), 3'ss of exon 3
gaaggtaggggtccagcagtgagcttggtatccttgttgcttacctgtagttttctataatcttcttatataataatatttgcttcatttgtatgtgaagGCACAAAAATCAAATTTGGAAGGACTTCTTCAAAGACATGTTGAAATGGCAGCTGAGATAAAAAATCTTGACACTGACTTGCAGATGTTAGTGTATGAAA
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----------gttt-gtgttaagtgtggtgacagtagtgctagcgatctgattgagata----tatgccacagtc-tggtgattttattggcttgtgcagATCAAAAAGTCGAATTTGGAGGTGCTTCTGCAAAGACATGTTCAAATGGCTGCTGAGATTAAAAATCTCGACACAGACTTGCAAATGCTAGTCTATGAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37184498|gb|CF603852.1|CF603852EST: ACGCCATCAACACGACTTCCTTCGATGCCGATCAGTACATGAATCTTCTG GCACAAAAATCAAATTTGGAAGGACTTCTTCAAAGACATGTTGAAATGGCA
genomic: ACGCCATCAACACGACTTCCTTCGATGCCGATCAGTACATGAATCTTCTGgtacgcacaa ... gtatgtgaagGCACAAAAATCAAATTTGGAAGGACTTCTTCAAAGACATGTTGAAATGGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtagttttctataatcttcttatataataatatttgcttcatttgtatgtgaagGCACAAAAATCAAATTTGGAAGGACTTCTTCAAAGACATGTTGAAATGGCAGCTGAGATAAAAAATCTTGACACTGACTTGCAGATGTTAGTGTATGAAA
ttttctataatcttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaaggtaggggtccagcagtgagcttggtatccttgttgcttacctgtagttttctataatcttcttatataataatatttgcttcatttgtatgtgaagGCACAAAAATCAAATTTGGAAGGACTTCTTCAAAGACATGTTGAAATGGCAGCTGAGATAAAAAATCTTGACACTGACTTGCAGATGTTAGTGTATGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- -ggtaggg
- - - - - -tccagca
- - - - - - - - - - -agcttgg
- - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - -tacctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttca