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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagactcttcttcttcttcttccccctctccctctctccggtcatttctttgttttctgggtcatttgagactgaaattacagcatatccttgtagAAGATAGACGACTCTCAGCAACGAACAGAGGATGTGAAACCCAGTAAAGAAACAGTGCCATTTGTGCCTCCAAAGCCTCCATATGCCGCCTCCCCAAGGC

Basic information

species Vitis vinifera
transcript Vv07s0005g01080.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110397670|gb|EC963481.1|EC963481
EST:     CTGCAGACCCAGGTATCAAGGAGGACCTCGTTCACCCTAGAGACAACGAT                         AAGATAGACGACTCTCAGCAACGAACAGAGGATGTGAAACCCAGTAAAGAA
genomic: CTGCAAACCCAGGTATCAAGGAGGACCTCGTTCACCCTAGAGACAACGATgtaagactct ... atccttgtagAAGATAGACGACTCTCAGCAACGAACAGAGGATGTGAAACCCAGTAAAGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatttctttgttttctgggtcatttgagactgaaattacagcatatccttgtagAAGATAGACGACTCTCAGCAACGAACAGAGGATGTGAAACCCAGTAAAGAAACAGTGCCATTTGTGCCTCCAAAGCCTCCATATGCCGCCTCCCCAAGGC
                                            tatcctt  CT-rich tract
       tttgtttt  TA-rich tract