Sequence
atgc intronic sequence ATGC exonic sequence...aattagagattttgaccttttaagatttgagctctatgaggtttcgcccaaagcaattatatgtatgctgattctctccttttgttttcttcatttccagTGGGTGAACTTGCAGGGGAGGATGTTTTGCGAATGTTCTTTAAGGAGAGAGAATTGAATGGGGATTTTATTTCAAAAGCTTCTGATATGCTTTGGCAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0080g00890.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G09720.2 (Glycine max), 3'ss of exon 1
aattagagat-tttgaccttttaagatttgagctctatgaggtttcgcccaaagcaattatatgtatgctgattctctccttttgttttcttcatttccagTGGGTGAACTTGCAGGGGAGGATGTTTTGCGAATGTTCTTTAAGGAGAGAGAATTGAATGGGGATTTTATTTCAAAAGCTTCTGATATGCTTTGGCAGAG---
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-ttaagtaatacttaatccttggcacagtatcttttttcttgtcattgtcactcagtccttgtttctgctgaaagctaattggttgaaactcattttttagTGAGTAA---TGCAGACGAGGATGTCTTGCAAATATTTTTTAAGGAGAGAGAATTAAATGGGGATTTTATATCAAGAGCTTCCGATTTACTATGGAGAAGAGA
upper sequence: Vv06s0080g00890.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G18700.1 (Glycine max), 3'ss of exon 1
aattagagattttgaccttttaagatttgagctctatgaggtttcgcccaaagcaattat-atgtatgctgattctctccttttgttttcttcatttccagTGGGTGAACTTGCAGGGGAGGATGTTTTGCGAATGTTCTTTAAGGAGAGAGAATTGAATGGGGATTTTATTTCAAAAGCTTCTGATATGCTTTGGCAGAG---------------------------------------------
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------------------------------------------ttcttttcactcagtccttgtttctgctgaaagctaattggttgaaactcattttttagtgagtga---tacagatgaggatgtcttgcaaatattttttaagGAGAGAGAATT-AATGGGGATTTTATATCAAGAGCTTCCGATTTATTATGGAGAAGAGATTTCAGAAGTTCTGGTGATTATGATATTAGCGAGCTCACCGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690320|gb|EC950970.1|EC950970EST: CCATTCCACCAGACTTCCATCTCTCTCTGTCCTTAGAACTCCTCGTCCAG TGGGTGAACTTGCAGGGGAGGATGTTTTGCGAATGTTCTTTAAGGAGAGAG
genomic: CCATTCTACCAGACTTCCATCTCTCTCTGTCCTTAGAACTCCTCGTCCAGgtgggtccct ... tcatttccagTGGGTGAACTTGCAGGGGAGGATGTTTTGCGAATGTTCTTTAAGGAGAGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcccaaagcaattatatgtatgctgattctctccttttgttttcttcatttccagTGGGTGAACTTGCAGGGGAGGATGTTTTGCGAATGTTCTTTAAGGAGAGAGAATTGAATGGGGATTTTATTTCAAAAGCTTCTGATATGCTTTGGCAGAG
tgctgat putative branch site (score: 3)
ctgattctctcctttt CT-rich tract
aattatatgtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aattagagattttgaccttttaagatttgagctctatgaggtttcgcccaaagcaattatatgtatgctgattctctccttttgttttcttcatttccagTGGGTGAACTTGCAGGGGAGGATGTTTTGCGAATGTTCTTTAAGGAGAGAGAATTGAATGGGGATTTTATTTCAAAAGCTTCTGATATGCTTTGGCAGAG
- - - - - - - - - - - - - - - -ctctatg
- - - - - - - - - - - - - - - - - - - - - ttcgccc
- - - - - - - - - - - - - - - - - - - - - - - - -aaagcaa