1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaattgttaattgctacaaaatcatttgagttcctaactgctactattaccattcttttcttttttctttcttattcttctttctctttgtggttatcagGTTTCGGCTTTCTCCGTGTAGTTCTTATTGAATACTTGGTTTGATATTGGACGGTTAATCGCAAAAATAAGAAAGCAATCATGGATG
species | Vitis vinifera |
transcript | Vv06s0080g00010.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACCTACGCCGGAGTCAGCCGCCTCCGAAGTCCATTGGCAGTAACTAAGT GTTTCAGCTTTCTCCCTCTGTGTAGTTCTTATTGAATACTTGGTTTGATATEST: gi|294964002|gb|GW836877.1|GW836877
genomic: TACCTACGCCGGAGTCAGCCGCCTCCGAAGTCCACTGGCAGTAACTAAGTgttagggttc ... tggttatcagGTTTCGGCTTTCT--C-C-GTGTAGTTCTTATTGAATACTTGGTTTGATAT
EST: TACCTACGCCGGAGTCAGCCGCCTCCGAAGTCCACTGGCAGTAACTAAGT GTTTCAGCTTTCTCCCTCTGTGTAGTTCTTATTGAATACTTGGTTTGATAT
genomic: TACCTACGCCGGAGTCAGCCGCCTCCGAAGTCCACTGGCAGTAACTAAGTgttagggttc ... tggttatcagGTTTCGGCTTTCT--C-C-GTGTAGTTCTTATTGAATACTTGGTTTGATAT
attaccattcttttcttttttctttcttattcttctttctctttgtggttatcagGTTTCGGCTTTCTCCGTGTAGTTCTTATTGAATACTTGGTTTGATATTGGACGGTTAATCGCAAAAATAAGAAAGCAATCATGGATG
ttcttttcttttttct CT-rich tract
ttttcttttttctttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattgttaattgctacaaaatcatttgagttcctaactgctactattaccattcttttcttttttctttcttattcttctttctctttgtggttatcagGTTTCGGCTTTCTCCGTGTAGTTCTTATTGAATACTTGGTTTGATATTGGACGGTTAATCGCAAAAATAAGAAAGCAATCATGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - ttgctac
- - - - - - - - -aaaatca
- - - - - - - - - - - - - - - -tcctaac