1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctaggtaattaaacagagcattaggattatatctgtgcccttgaaactgttactgcgttggatgagactctgatttgtgatgtttttattgttgttgaagGGTAATCTAGCGGACCCAAGAATGAGGGCTGCTTCAAAAAGGCGTGGGATTGAGATAACTTCCATCTCAAGGCCAATCCAGCCATCTGATTTTAGAGATT
species | Vitis vinifera |
transcript | Vv06s0061g01530.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGATTCCAAGTTCAAAATTGATTCTGCTGGCACCATTAATTATCACGAG GGTAATCTAGCGGACCCAAGAATGAGGGCTGCTTCAAAAAGGCGTGGGATTEST: gi|351046715|gb|FQ453331.1|FQ453331
genomic: TGGATTCCAAGTTCAAAATTGATTCTGCTGGCACCATTAATTATCACGAGgtatattggt ... gttgttgaagGGTAATCTAGCGGACCCAAGAATGAGGGCTGCTTCAAAAAGGCGTGGGATT
EST: TGGATTCCAAGTTCAAAATTGATTCTGCTGGCACCATTAATTATCACGAG GGTAATCTAGCGGACCCAAGAATGAGGGCTGCTTCAAAAAGGCGTGGGATTEST: gi|351048361|gb|FQ449453.1|FQ449453
genomic: TGGATTCCAAGTTCAAAATTGATTCTGCTGGCACCATTAATTATCACGAGgtatattggt ... gttgttgaagGGTAATCTAGCGGACCCAAGAATGAGGGCTGCTTCAAAAAGGCGTGGGATT
EST: TGGATTCCAAGTTCAAAATTGATTCTGCTGGCACCATTAATTATCACGAG GGTAATCTAGCGGACCCAAGAATGAGGGCTGCTTCAAAAAGGCGTGGGATTEST: gi|33401488|gb|CF207115.1|CF207115
genomic: TGGATTCCAAGTTCAAAATTGATTCTGCTGGCACCATTAATTATCACGAGgtatattggt ... gttgttgaagGGTAATCTAGCGGACCCAAGAATGAGGGCTGCTTCAAAAAGGCGTGGGATT
EST: TGGATTCCAAGTTCAAAATTGATTCTGCTGGCACCATTAATTATCACGAG GGTAATCTAGCGGACCCAAGAATGAGGGCTGCTTCAAAAAGGCGTGGGATT
genomic: TGGATTCCAAGTTCAAAATTGATTCTGCTGGCACCATTAATTATCACGAGgtatattggt ... gttgttgaagGGTAATCTAGCGGACCCAAGAATGAGGGCTGCTTCAAAAAGGCGTGGGATT
actgttactgcgttggatgagactctgatttgtgatgtttttattgttgttgaagGGTAATCTAGCGGACCCAAGAATGAGGGCTGCTTCAAAAAGGCGTGGGATTGAGATAACTTCCATCTCAAGGCCAATCCAGCCATCTGATTTTAGAGATT
ctctgat putative branch site (score: 4)
atgtttttattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaggtaattaaacagagcattaggattatatctgtgcccttgaaactgttactgcgttggatgagactctgatttgtgatgtttttattgttgttgaagGGTAATCTAGCGGACCCAAGAATGAGGGCTGCTTCAAAAAGGCGTGGGATTGAGATAACTTCCATCTCAAGGCCAATCCAGCCATCTGATTTTAGAGATT
- - - aattaaa
- - - - - - - - - - - - - - - - - -tgccctt
- - - - - - - - - - - - - - - - - - - - - - - - -ttactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gactctg