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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttcatgtagttatgcttgattatttgatgtttttagagtaagcagaactctaatttagcattaatttgtctataatttgaaatggtttactgatacttagacaaaatgtttcagTTCCAATTGGTTTATATGGGTTCCAGCATTATGTTTCGATATTGGGTTCCTTGATTCTAATTCCACTAGTCATAGTTCCGGCAATGGGTGGTGATCAT

Basic information

species Vitis vinifera
transcript Vv06s0061g01310.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G05280.1 (Glycine max), 3'ss of exon 1
gtgagtttcatgtagttatgcttga--ttatttgatgtttttagagtaagcagaactctaatttagcattaatttgtctataatttgaaatggtttactgatacttagacaaaatgtttcagTTCCAATTGGTTTATATGGGTTCCAGCATTATGTTTCGATATTGGGTTCCTTGATTCTAATTCCACTAGTCATAGTTCCGGCAATGGGTGGTGATCAT
          ||    ||||  | |   ||| || | | |||  |||    | || | | || ||   || | ||   ||| |  |  |||  |||| |  |  || |     ||| || |||||| |||||| | || ||  | || |||||  | |||||||||||||| |||||||| ||||| || || ||||||||||||||||| ||   ||||
---------gtgagaatatgaataaagatatatgctttctttgaagttg--aaaattttgatgtaaagtttaatt---tatgagct--aattttttatt--ttttttgtatggatggtttagTTCCCATTGGTGTGTACGGTATTCAACATTACTTATCGATATTGGGTTCGTTGATTCTCATTCCGCTCGTTATAGTTCCGGCAATGGGAGGCTCTCAT

upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G30670.1 (Glycine max), 3'ss of exon 1
gtgagtttcatgtagttatgcttgattatttgatgtttttagagtaagcagaactctaatttagcatt-aatttgt---ctataatttgaaatggtttactgatacttagacaaaatgtttcagTTCCAATTGGTTTATATGGGTTCCAGCATTATGTTTCGATATTGGGTTCCTTGATTCTAATTCCACTAGTCATAGTTCCGGCAATGGGTGGTGATCAT
          ||    || |  | |  || |    ||| |    |    | || | | || |||  || || || |   |||   ||||      |||  |  || ||       ||| || |||||| |||||| | || ||  | || |||||  |||||||||||||||| |||||||| ||||| || || ||||||||||| ||||| ||   ||||
---------gtgagaataagaataaagatatatgctttctttgattttgaaaattttgatgtagagttcaacttatgagctaatgtttgtttgttttttattttattttttatggatggtttagTTCCCATTGGTGTGTACGGTATTCAACATTACTTTTCGATATTGGGTTCGTTGATTCTCATTCCGCTCGTTATAGTTCCGGCGATGGGAGGCTCTCAT

upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G27810.3 (Arabidopsis thaliana), 3'ss of exon 1
gtgagtttcatgtagttatgcttgattatttgatgtttttagagtaagcagaactctaatttagcattaatttgtctataatttgaaatggtttactgatacttagacaaaatg----tttcagTTCCAATTGGTTTATATGGGTTCCAGCATTATGTTTCGATATTGGGTTCCTTGATTCTAATTCCACTAGTCATAGTTCCGGCAATGGGTGGTGATCAT
                     |||   |||| ||||    | ||| |    | || |  || |   ||  ||| | |||  || |   | | ||| ||||  ||        |     |||||||||||||||| || ||||| || ||||||||  |||| || ||||| || ||||||||  ||||||| || || ||||| |||||||| |||   |||
---------------------ttgtggatttcatgtcag-atagtgactgaatcttt--ttaaagtttcttttttttatttttggtgtttggttaatgattgttgtgtgtgtttgtgttttcagTTCCAATTGGGTTCTATGGTTTGCAGCATTACCTTTCAATGTTGGGATCATTGATTCTGGTTCCACTTGTTATTGTTCCTGCAATGGGAGGTTCACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaatttgtctataatttgaaatggtttactgatacttagacaaaatgtttcagTTCCAATTGGTTTATATGGGTTCCAGCATTATGTTTCGATATTGGGTTCCTTGATTCTAATTCCACTAGTCATAGTTCCGGCAATGGGTGGTGATCAT
                            tactgat  putative branch site (score: 2)
         tctataatttgaaat  TA-rich tract