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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccctctctccccatatcttcatcgttgaatctcagccgtaaaaaaaaattgttgttgaattcaacacgtgtagtggtggtgattgatacggtttttgaatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCCTGTGCTGCAAAAAATCTGAACCAGACGTTGGCGAGAGCGCCGCCGAAGC

Basic information

species Vitis vinifera
transcript Vv06s0061g01250.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30326845|gb|CD010107.1|CD010107
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|30327755|gb|CD011017.1|CD011017
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110401847|gb|EC968471.1|EC968471
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110384339|gb|EC948769.1|EC948769
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110691693|gb|EE070083.1|EE070083
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110362992|gb|EC926557.1|EC926557
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110389779|gb|EC954646.1|EC954646
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|30133091|gb|CB918430.1|CB918430
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110388528|gb|EC953289.1|EC953289
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|33407538|gb|CF213165.1|CF213165
EST:     ACGGATCCCGCCGGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: ACGGATCCCGCCGG-TTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110378271|gb|EC943394.1|EC943394
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110732582|gb|EE107996.1|EE107996
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|22007013|gb|BQ792047.1|BQ792047
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|28962004|gb|CB341037.1|CB341037
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110386739|gb|EC951360.1|EC951360
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110386386|gb|EC950979.1|EC950979
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|30322560|gb|CD005822.1|CD005822
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110419168|gb|EC985375.1|EC985375
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|71877006|gb|DT026061.1|DT026061
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110707379|gb|EE083728.1|EE083728
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAAAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|161714437|gb|FC064436.1|FC064436
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|26262873|gb|CA813936.1|CA813936
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|32271669|gb|CD720828.1|CD720828
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|46919689|gb|CN549018.1|CN549018
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110377097|gb|EC942157.1|EC942157
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110375882|gb|EC940905.1|EC940905
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|30328120|gb|CD011382.1|CD011382
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|28961878|gb|CB340947.1|CB340947
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110693341|gb|EE069487.1|EE069487
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|33407453|gb|CF213080.1|CF213080
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110359385|gb|EC920787.1|EC920787
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110370111|gb|EC934291.1|EC934291
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|30129652|gb|CB914991.1|CB914991
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATC
EST: gi|32271982|gb|CD721141.1|CD721141
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110356575|gb|EC919502.1|EC919502
EST:     CACGGATCCCGCCGGTTTCAATCTTCATTATTCGCAATTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACGTTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
EST: gi|110395598|gb|EC961265.1|EC961265
EST:     CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAA                         GTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC
genomic: CACGGATCCCGCCGGTTTCGATCTTCATTATTCGCAGTTCAGTTTAGAAAgtaagccctc ... aatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgaattcaacacgtgtagtggtggtgattgatacggtttttgaatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCCTGTGCTGCAAAAAATCTGAACCAGACGTTGGCGAGAGCGCCGCCGAAGC
                            gattgat  putative branch site (score: 4)
                                       tttttgaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagccctctctccccatatcttcatcgttgaatctcagccgtaaaaaaaaattgttgttgaattcaacacgtgtagtggtggtgattgatacggtttttgaatgcggcagGTCTGGACAGAAACGAAAAGCTGATGACATTGGGATCGCGAAACTTCTTCCTGTGCTGCAAAAAATCTGAACCAGACGTTGGCGAGAGCGCCGCCGAAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC