Sequence
atgc intronic sequence ATGC exonic sequence...gcattccaataattgactagtagactaatactgacacacacatatacagaacagaaatatcatatgattggtgggatgtgaatacgattatgaaatgcagGATCGTGGGTGCACTGTGGGTACCACTTGACAACTTCAATTGTTGCTCCACCTCTCTTGAGTCTCCCATATGCATTTACATTCTTGGGATGGGCAGCTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g01210.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G05380.1 (Glycine max), 3'ss of exon 1
-gcattccaataattgactagtagactaatactgacacacacatatacagaacagaaatatcatatgattggtgggatgtgaatacgattatgaaat---gcagGATCGTGGGTGCACTGTGGGTACCACTTGACAACTTCAATTGTTGCTCCACCTCTCTTGAGTCTCCCATATGCATTTACATTCTTGGGATGGGCAGCTGG
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agctagcttttcatt--cctctggattaaaacaaaggctaatgtattcaagattttaattaaaaagggttatttc-atgcgact-cacttatgattttttgtagGTACATGGATGCACTGTGGTTACCACTTGACAACATCAATTGTGGCTCCACCACTCCTAAGTCTTCCATATGCTTTCACCTTCCTCGGATGGACAACCGG
upper sequence: Vv06s0061g01210.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G05360.1 (Glycine max), 3'ss of exon 1
gcattccaataattgactagtagactaatactgacacacacatatacagaacagaaatatca--tatgattggtggg-atgtgaatac--gattatgaaatgc--agGATCGTGGGTGCACTGTGGGTACCACTTGACAACTTCAATTGTTGCTCCACCTCTCTTGAGTCTCCCATATGCATTTACATTCTTGGGATGGGCAGCTGG
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----tccatt--ttcctcgataaaatcaaaagggtat-catgcatattcgacattaattttaattaaaaatggtaattacattaatatttatttatgatttttttagGTTCATGGATTCACTGTGGTTACCACTTGACAACTTCAATTGTGTCTCCATCACTGCTAAGTCTTCCTTATGCTTTAACCTTTCTCGGATGGAAAGCTGG
upper sequence: Vv06s0061g01210.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G08980.1 (Glycine max), 3'ss of exon 1
gcattccaataattgactagtagactaatactgacacacacatatacagaacagaaatatcatatgattggtgggatgtgaatacgattatgaaat-gcagGATCGTGGGTGCACTGTGGGTACCACTTGACAACTTCAATTGTTGCTCCACCTCTCTTGAGTCTCCCATATGCATTTACATTCTTGGGATGGGCAGCTGG
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-aattggagcacatgggatgtacttgaagcaattaagacgagaaaatattctacatacattataaaatggatactatatgatattaggtgtgattttgtagGTTCTTGGATGCATTGTGGGTACCACTTGACAACTTCGATCGTGGCACCACCTCTTCTAAGTCTTCCTTATGCATTCACCTTCCTTGGATGGACGGCTGG
upper sequence: Vv06s0061g01210.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G30570.1 (Glycine max), 3'ss of exon 1
------gcattccaataattgactagtagactaatactgaca-cacacatatacagaacagaaatatcatatgattggtgggatgtgaatacgattatgaaatgcagGATCGTGGGTGCACTGTGGGTACCACTTGACAACTTCAATTGTTGCTCCACCTCTCTTGAGTCTCCCATATGCATTTACATTCTTGGGATGGGCAGCTGG
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gcattagcttttcatt--ttcctcgataaaatcaaaagggtatcatgcatattcgatattttaattaaaaatggccggtaatt-----acattatttatttttgtagGTTCATGGATTCACTGTGGTTACCACTTGACAACTTCAATCGTGTCTCCATCGCTGCTAAGTCTTCCTTATGCTTTAACCTTCCTCGGTTGGAAGGCTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acagaacagaaatatcatatgattggtgggatgtgaatacgattatgaaatgcagGATCGTGGGTGCACTGTGGGTACCACTTGACAACTTCAATTGTTGCTCCACCTCTCTTGAGTCTCCCATATGCATTTACATTCTTGGGATGGGCAGCTGG
aaatatcatatgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcattccaataattgactagtagactaatactgacacacacatatacagaacagaaatatcatatgattggtgggatgtgaatacgattatgaaatgcagGATCGTGGGTGCACTGTGGGTACCACTTGACAACTTCAATTGTTGCTCCACCTCTCTTGAGTCTCCCATATGCATTTACATTCTTGGGATGGGCAGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
gcattcc
- - - - - - - - - - - - - - tactgac
- - - - - - - - - - - - - - - - -acacaca
- - - - - - - - - - - - - - - - - - - - - - - - -aacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtggg