1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgaatgacctcactttaagtggaactatatgcttcacttgacacccaaatagtagaataatctaagagaccctgattttgatgattcttttcttttgtagGAGGGAAGAATTGATGAAAATGGTTACTTGCAATGTTCTTACCATGGATGGTCCTTTGACAAGTGTGGATCTTGCAAACGGATTCCCCAGGCCTTGCCTG
species | Vitis vinifera |
transcript | Vv06s0061g00790.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATGGGTTGCCTTTGATGACAAGTGCCCGCACCGCCTCGCCCCATTATCT GAGGGAAGAATTGATGAAAATGGTTACTTGCAATGTTCTTACCATGGATGGEST: gi|110357244|gb|EC920645.1|EC920645
genomic: AATGGGTTGCCTTTGATGACAAGTGCCCGCACCGCCTCGCCCCATTATCTgtaattttct ... tcttttgtagGAGGGAAGAATTGATGAAAATGGTTACTTGCAATGTTCTTACCATGGATGG
EST: AATGGGTTGCCTTTGATGACAAGTGCCCGCACCGCCTCGCCCCATTATCT GAGGGAAGAATTGATGAAAATGGTTACTTGCAATGTTCTTACCATGGATGGEST: gi|352769381|gb|FQ471530.1|FQ471530
genomic: AATGGGTTGCCTTTGATGACAAGTGCCCGCACCGCCTCGCCCCATTATCTgtaattttct ... tcttttgtagGAGGGAAGAATTGATGAAAATGGTTACTTGCAATGTTCTTACCATGGATGG
EST: AATGGGTTGCCTTTGATGACAAGTGCCCGCACCGCCTCGCCCCATTATCT GAGGGAAGAATTGATGAAAATGGTTACTTGCAATGTTCTTACCATGGATGG
genomic: AATGGGTTGCCTTTGATGACAAGTGCCCGCACCGCCTCGCCCCATTATCTgtaattttct ... tcttttgtagGAGGGAAGAATTGATGAAAATGGTTACTTGCAATGTTCTTACCATGGATGG
caaatagtagaataatctaagagaccctgattttgatgattcttttcttttgtagGAGGGAAGAATTGATGAAAATGGTTACTTGCAATGTTCTTACCATGGATGGTCCTTTGACAAGTGTGGATCTTGCAAACGGATTCCCCAGGCCTTGCCTG
ttttgat putative branch site (score: 4)
ttcttttcttttgt putative PPT
aataatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatgacctcactttaagtggaactatatgcttcacttgacacccaaatagtagaataatctaagagaccctgattttgatgattcttttcttttgtagGAGGGAAGAATTGATGAAAATGGTTACTTGCAATGTTCTTACCATGGATGGTCCTTTGACAAGTGTGGATCTTGCAAACGGATTCCCCAGGCCTTGCCTG
- - - acctcac
- - - - - - - - - - - - - - -tgcttca
- - - - - - - - - - - - - - - - - - - - acaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - -agaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accctga