1 5' 3' | 2 5' 3' | 3 5' 3' |
...acactaaaatatttttcagtgtatgattttctattgtgtgagatacaaaacacaatgtgattgaattgctatagctgatcttacttttgatgctgtgaagCAAGTAGGGACTTCAAGCCTCATATTCATAATGCGTTTGATCCAGATCCTATTTCTTCAACTGATGTGAAGTTACAAGCACAACGAAGAAAAATATGTAG
species | Vitis vinifera |
transcript | Vv06s0061g00330.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGGAGCTTGCACTGCACACTCTACCGTTAAAGA CAAGTAGGGACTTCAAGCCTCATATTCATAATGCGTTTGATCCAGATCCTAEST: gi|32249964|gb|CD715783.1|CD715783
genomic: ATGGAGCTTGCACTGCACACTCTACCGTTAAAGAgtaagataaa ... tgctgtgaagCAAGTAGGGACTTCAAGCCTCATATTCATAATGCGTTTGATCCAGATCCTA
EST: ATGGAGCTTGCACTGCACACTCTACCGTTAAAGA CAAGTAGGGACTTCAAGCCTCATATTCATAATGCGTTTGATCCAGATCCTAEST: gi|30328349|gb|CD011611.1|CD011611
genomic: ATGGAGCTTGCACTGCACACTCTACCGTTAAAGAgtaagataaa ... tgctgtgaagCAAGTAGGGACTTCAAGCCTCATATTCATAATGCGTTTGATCCAGATCCTA
EST: ATGGAGCTTGCACTGCACACTCTACCGTTAAAGA CAAGTAGGGACTTCAAGCCTCATATTCATAATGCGTTTGATCCAGATCCTAEST: gi|27578380|gb|CB001075.1|CB001075
genomic: ATGGAGCTTGCACTGCACACTCTACCGTTAAAGAgtaagataaa ... tgctgtgaagCAAGTAGGGACTTCAAGCCTCATATTCATAATGCGTTTGATCCAGATCCTA
EST: ATGGAGCTTGCACTGCACACTCTACCGTTAAAGA CAAGTAGGGACTTCAAGCCTCATATTCATAATGCGTTTGATCCAGATCCTA
genomic: ATGGAGCTTGCACTGCACACTCTACCGTTAAAGAgtaagataaa ... tgctgtgaagCAAGTAGGGACTTCAAGCCTCATATTCATAATGCGTTTGATCCAGATCCTA
caaaacacaatgtgattgaattgctatagctgatcttacttttgatgctgtgaagCAAGTAGGGACTTCAAGCCTCATATTCATAATGCGTTTGATCCAGATCCTATTTCTTCAACTGATGTGAAGTTACAAGCACAACGAAGAAAAATATGTAG
attgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acactaaaatatttttcagtgtatgattttctattgtgtgagatacaaaacacaatgtgattgaattgctatagctgatcttacttttgatgctgtgaagCAAGTAGGGACTTCAAGCCTCATATTCATAATGCGTTTGATCCAGATCCTATTTCTTCAACTGATGTGAAGTTACAAGCACAACGAAGAAAAATATGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- actaaaa
- - - - - - - - - gtgtatg
- - - - - - - - - - - - - - - - - tgtgtga
- - - - - - - - - - - - - - - - - - - - - atacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - cacaatg