Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110425222|gb|EC991604.1|EC991604EST: TTCAGTTATTTTCTACAAGGGATTTCTGTGAAAAAGAAGGAAAATAGAAA GAATCCGAAGTCATGGAGGGTGGCAGCTCACTCATTCCTCAAG
genomic: TGCAGTTATTTTCTACAAGGGATTTCTGTGAAAAAGAAGGAAAATAGAAAgtaagtgagg ... tttcttccagGAATCCGAAGTCATGGAGGGTGGCAGCTCACTCATTCCTCAAG
EST:
gi|110391552|gb|EC956534.1|EC956534EST: TGCAGTTATTTTCTACAAGGGATTTCTGTGAAAAAGAAGGAAAATAGAAA GAATCCGAAGTCATGGAGGGTGGCAGCTCACTCATTCCTCAAG
genomic: TGCAGTTATTTTCTACAAGGGATTTCTGTGAAAAAGAAGGAAAATAGAAAgtaagtgagg ... tttcttccagGAATCCGAAGTCATGGAGGGTGGCAGCTCACTCATTCCTCAAG
EST:
gi|77578621|gb|DV218102.1|DV218102EST: TGCAGTTATTTTCTACAAGGGATTTCTGTGAAAAAGAAGGAAAATAGAAA GAATCCGAAGTCATGGAGGGTGGCAGCTCACTCATTCCTCAAG
genomic: TGCAGTTATTTTCTACAAGGGATTTCTGTGAAAAAGAAGGAAAATAGAAAgtaagtgagg ... tttcttccagGAATCCGAAGTCATGGAGGGTGGCAGCTCACTCATTCCTCAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatcttctctactattacgaaaccgctaatttgagacgatttttttcttccagGAATCCGAAGTCATGGAGGGTGGCAGCTCACTCATTCCTCAAG
cgctaat putative branch site (score: 3)
cgatttttttcttcc putative PPT
atttttttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtgagggaaacttggtgtaatgtagcgatgtataagcagctagcattgtatgagagatgtttggcagtcaaaaaaatttaagggaaattaagattagaaggttgaatgcatggatatatgcttaatggtttatcttctctactattacgaaaccgctaatttgagacgatttttttcttccagGAATCCGAAGTCATGGAGGGTGGCAGCTCACTCATTCCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA