Sequence
atgc intronic sequence ATGC exonic sequence...attaactaaaccatcttatatgaatctagacagattctaggacacaattagatactaagaatctgctttaattctaacagtttaatgtgatttatatcagGGGAAACCAAGCCTACACAAATGGGGATTTGTCTAAAGCTGAGGACTGTTACACACAAGGGGTGAATTGCATTTCTCAAAGTGAGACATCTAAAAGCTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g00090.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G43690.1 (Glycine max), 3'ss of exon 2
---attaactaaacca--tcttatatgaatctagacagattctaggacacaattagatactaagaatctgctttaattctaacag--tttaatgtgatttatatcagGGGAAACCAAGCCTACACAAATGGGGATTTGTCTAAAGCTGAGGACTGTTACACACAAGGGGTGAATTGCATTTCTCAAAGTGAGACATCTAAAAGCTGT
| | ||| ||| || | ||| | | | | || | | |||| | | | || | || || || | | || || |||||| ||| |||||||||||||||| |||||| |||||||| |||||||| || ||||||||||| || | ||| |||| || ||| | ||| | || ||
aacactcctgaaaatgggactttcattatgctaaataaagttta---cgtagttagtttt----attttggtggaacactcacgggactgaacatgctttataacagAGGAAACCAAGCCTACAAAAATGGAAATTTGTCTGTGGCTGAGGATTGCTACACACAAGGAGTTAGTTGTGCTTCTAAAGTTGAAGCGTCTCAGAGATGC
upper sequence: Vv06s0061g00090.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G02420.1 (Glycine max), 3'ss of exon 3
--attaactaaaccatctt-atatgaatctagacagattctaggacacaattagatactaagaat-ctgctttaattctaacagtttaatgtgatttatatcagGGGAAACCAAGCCTACACAAATGGGGATTTGTCTAAAGCTGAGGACTGTTACACACAAGGGGTGAATTGCATTTCTCAAAGTGAGACATCTAAAAGCTGT---
||| ||| | || | ||| || |||| | |||| | | ||| || | | | | | |||| || | ||| || | |||||||| |||||||||||||| | ||| |||||| |||||| |||||| | ||||||| |||||| | | ||| || ||| || || ||||| ||||||
gtattttgcaaagtactttgaaatggttcct--ttgatttt--gacatagtaccttaccaacattgcaaccattattcaaaatactgaatatgctctatatcagAGGAAACCAAGCCTATAAAAAGGGGGATCTGTCTACGGCTGAGAATTGTTACAAACAAGGACTTAGTTGTATATCTAAA---GAAGCATCTCGTAGCTGTCTC
upper sequence: Vv06s0061g00090.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G10100.1 (Glycine max), 3'ss of exon 4
-attaactaaaccatcttatatgaatctagacagattctaggacacaattagatactaagaat-ctgctttaattctaacagtttaatgtgatttatatcagGGGAAACCAAGCCTACACAAATGGGGATTTGTCTAAAGCTGAGGACTGTTACACACAAGGGGTGAATTGCATTTCTCAAAGTGAGACATCTAAAAGCTGT---
||| ||| | ||| | | |||| | |||| | | ||| | | | | | | |||| | | ||| || | |||| ||| |||||||||||||| | ||| |||||| |||||| |||||| | ||||||| ||||||| | | ||| || || || || ||||| ||||||
gattttgcaaagtaactttgaaatggttcctttgatttt--gacatagtactttacctacattgcaaccattattcacaatactgaatatgctctataccagAGGAAACCAAGCCTATAAAAAGGGGGATCTGTCTACGGCTGAGAATTGTTACAAACAAGGGCTTAGTTGTATATCCAAA---GAAGCATCTCGTAGCTGTCTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattagatactaagaatctgctttaattctaacagtttaatgtgatttatatcagGGGAAACCAAGCCTACACAAATGGGGATTTGTCTAAAGCTGAGGACTGTTACACACAAGGGGTGAATTGCATTTCTCAAAGTGAGACATCTAAAAGCTGT
tttaatgtgatttata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attaactaaaccatcttatatgaatctagacagattctaggacacaattagatactaagaatctgctttaattctaacagtttaatgtgatttatatcagGGGAAACCAAGCCTACACAAATGGGGATTTGTCTAAAGCTGAGGACTGTTACACACAAGGGGTGAATTGCATTTCTCAAAGTGAGACATCTAAAAGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - -aaaccat
- - - - - - - - - - - - - -agacaga
- - - - - - - - - - - - - - - - - - - - gacacaa