Sequence
atgc intronic sequence ATGC exonic sequence...taacctacctactttattttattatgttttctcaatcagtgcctcttattctgcagtctgcacatgttctacatctctcatcatttccattttctgatagGTATCAGCTCATACATCAGCGGGAAAGACTGTTGTAGCGTTATATGCTATTGCCATGTCATTGCAAAACAATCAACGAGTAATATACACTTCGCCTATCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G040995_T02 (Zea mays), 3'ss of exon 1
taacctacctactttattttattatgttttctcaatcagtgcctcttattctgcagtc-tgcacatgttctacatctctcatcatttccattttctgatagGTATCAGCTCATACATCAGCGGGAAAGACTGTTGTAGCGTTATATGCTATTGCCATGTCATTGCAAAACAATCAACGAGTAATATACACTTCGCCTATCA
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ctgtatgtacagtcaaaccagtcattctttcatgatttcatcagctaagttgtttgtcacttatagaatctttctctactttccttttggggttttc-tagGTTTCAGCTCATACGTCAGCGGGAAAGACAGTAGTCGCGTTGTATGCAATAGCGATGTCTTTGCGCAACCAACAGCGGGTCATTTATACATCTCCAATCA
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G59760.1 (Arabidopsis thaliana), 3'ss of exon 1
---------------------------------------------taaccta-cctactttattttattatgttttctcaatcagtgcctcttattctgcagtctgcaca-tgttctacatct---------ctcatcatttccattttctgat-agGTATCAGCTCATACATCAGCGGGAAAGACTGTTGTAGCGTTATATGCTATTGCCATGTCATTGCAAAACAATCAACGAGTAATATACACTTCGCCTATCA
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gtaagcttttactctggcttcaattgattttggtcactgaatttctaatctgtcctattgaattggtgaatcaatttgtaaagattacatattttggttcaagctgtgaacttttctagttttgtgagaaaactgaagagtatggtttcatgttcagGTTTCAGCTCATACATCAGCTGGTAAAACTGTTGTGGCGTCGTATGCTATTGCCATGTCTTTGAAGGAAAACCAGAGAGTTATTTACACTTCTCCTATAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttattctgcagtctgcacatgttctacatctctcatcatttccattttctgatagGTATCAGCTCATACATCAGCGGGAAAGACTGTTGTAGCGTTATATGCTATTGCCATGTCATTGCAAAACAATCAACGAGTAATATACACTTCGCCTATCA
tctctcatcatttcca CT-rich tract
atcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taacctacctactttattttattatgttttctcaatcagtgcctcttattctgcagtctgcacatgttctacatctctcatcatttccattttctgatagGTATCAGCTCATACATCAGCGGGAAAGACTGTTGTAGCGTTATATGCTATTGCCATGTCATTGCAAAACAATCAACGAGTAATATACACTTCGCCTATCA
- acctacc
- - - - - - - - - - - - - - - -tcaatca
- - - - - - - - - - - - - - - - - - - -tgcctct
- - - - - - - - - - - - - - - - - - - - - - - - -tctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacatg